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AZGP1P2 AZGP1 pseudogene 2 [ Homo sapiens (human) ]

Gene ID: 401393, updated on 10-Oct-2023

Summary

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Official Symbol
AZGP1P2provided by HGNC
Official Full Name
AZGP1 pseudogene 2provided by HGNC
Primary source
HGNC:HGNC:912
See related
Ensembl:ENSG00000214252 AllianceGenome:HGNC:912
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
7q22.1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (101287479..101289775, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (102610955..102613251, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (100930760..100933056, complement)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:100883201-100883744 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26402 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26403 Neighboring gene fission, mitochondrial 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26404 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:100893889-100894842 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26405 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18482 Neighboring gene ReSE screen-validated silencer GRCh37_chr7:100909266-100909443 Neighboring gene RNA, U6 small nuclear 1104, pseudogene Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:100933165-100933715 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26406 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:100934773-100935682 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:100935683-100936592 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:100936593-100937501 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:100937502-100938411 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:100940231-100941139 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:100943223-100943888 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:100945388-100946089 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:100946090-100946792 Neighboring gene lncRNA p53 regulated and ESC associated 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:100952259-100953086 Neighboring gene E2F1 mRNA stabilizing lncRNA Neighboring gene intraflagellar transport 22

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Human Zn-alpha 2-glycoprotein: complete genomic sequence, identification of a related pseudogene and relationship to class I major histocompatibility complex genes. Freije JP, et al. Genomics, 1993 Dec. PMID 8307568
  2. Molecular cloning and chromosomal assignment of the gene for human Zn-alpha 2-glycoprotein. Ueyama H, et al. Biochemistry, 1993 Dec 7. PMID 8241150
  3. The DNA sequence of human chromosome 7. Hillier LW, et al. Nature, 2003 Jul 10. PMID 12853948
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • Putative zinc-alpha-2-glycoprotein-like 2
  • alpha-2-glycoprotein 1, zinc pseudogene 2
  • alpha-2-glycoprotein 1, zinc-binding pseudogene 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_008494.3 

    Range
    101..2397
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    101287479..101289775 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    102610955..102613251 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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