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GARS1-DT GARS1 divergent transcript [ Homo sapiens (human) ]

Gene ID: 401320, updated on 10-Oct-2023

Summary

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Official Symbol
GARS1-DTprovided by HGNC
Official Full Name
GARS1 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:48951
See related
AllianceGenome:HGNC:48951
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
GARS-DT
Expression
Ubiquitous expression in bone marrow (RPKM 5.2), lung (RPKM 4.4) and 24 other tissues See more
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Genomic context

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Location:
7p14.3
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (30548357..30577779, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (30686038..30715371, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (30587973..30617395, complement)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene golgin A8 family member A pseudogene Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr7:30588305-30588806 Neighboring gene TRPC6 pseudogene 10 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25815 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:30633949-30634562 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:30634563-30635176 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:30635177-30635790 Neighboring gene glycyl-tRNA synthetase 1 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:30681423-30682118 Neighboring gene uncharacterized LOC124901609 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:30692507-30693496 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr7:30694345-30695544 Neighboring gene corticotropin releasing hormone receptor 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. A non-coding CRHR2 SNP rs255105, a cis-eQTL for a downstream lincRNA AC005154.6, is associated with heroin addiction. Levran O, et al. PLoS One, 2018. PMID 29953524, Free PMC Article
  2. Human chromosome 7: DNA sequence and biology. Scherer SW, et al. Science, 2003 May 2. PMID 12690205, Free PMC Article
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Other Names

  • GARS divergent transcript

Clone Names

  • FLJ14434, FLJ37533, FLJ38737, FLJ39368, FLJ39921, AC005154.1, AC005154.6

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_038889.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC005154, AF086221, AK094852, AK096056, AW952614

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    30548357..30577779 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    30686038..30715371 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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