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LINC00487 long intergenic non-protein coding RNA 487 [ Homo sapiens (human) ]

Gene ID: 400941, updated on 10-Oct-2023

Summary

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Official Symbol
LINC00487provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 487provided by HGNC
Primary source
HGNC:HGNC:42947
See related
Ensembl:ENSG00000205837 AllianceGenome:HGNC:42947
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in lymph node (RPKM 1.3), appendix (RPKM 0.4) and 10 other tissues See more
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Genomic context

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See LINC00487 in Genome Data Viewer
Location:
2p25.2
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (6729168..6770311, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (6750756..6791900, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (6869300..6910442, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 1246 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:6779905-6780508 Neighboring gene MIR7515 host gene Neighboring gene microRNA 7515 Neighboring gene uncharacterized LOC105373404 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr2:6913298-6914497 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:6946605-6947167 Neighboring gene Sharpr-MPRA regulatory region 11536 Neighboring gene negative regulator of interferon response

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Clone Names

  • FLJ42418, AC079923.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_038369.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AA768014, AC079923, AK124409, BX118372
    Related
    ENST00000382045.3

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    6729168..6770311 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    6750756..6791900 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001001695.1: Suppressed sequence

    Description
    NM_001001695.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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