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BCRP2 BCR pseudogene 2 [ Homo sapiens (human) ]

Gene ID: 400892, updated on 10-Oct-2023

Summary

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Official Symbol
BCRP2provided by HGNC
Official Full Name
BCR pseudogene 2provided by HGNC
Primary source
HGNC:HGNC:1015
See related
Ensembl:ENSG00000291044 AllianceGenome:HGNC:1015
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
BCR2; BCR-2; BCRL2
Expression
Biased expression in testis (RPKM 26.7), brain (RPKM 2.5) and 3 other tissues See more
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Genomic context

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Location:
22q11.21
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (21103016..21122286)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 22 NC_060946.1 (21511794..21531059)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 22 NC_000022.10 (21457305..21476575)

Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112268300 Neighboring gene tubulin alpha 3g pseudogene Neighboring gene MPRA-validated peak4461 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:21456701-21457672 Neighboring gene POM121 transmembrane nucleoporin like 7 pseudogene Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:21483022-21483890 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr22:21498806-21499306 Neighboring gene E2F transcription factor 6 pseudogene 2 Neighboring gene ReSE screen-validated silencer GRCh37_chr22:21507745-21507931 Neighboring gene MPRA-validated peak4462 silencer Neighboring gene MPRA-validated peak4464 silencer Neighboring gene family with sequence similarity 230 member B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Linear order of the four BCR-related loci in 22q11. Budarf M, et al. Genomics, 1988 Aug. PMID 3267213
  2. The DNA sequence of human chromosome 22. Dunham I, et al. Nature, 1999 Dec 2. PMID 10591208
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Other Names

  • breakpoint cluster region pseudogene 2
  • breakpoint cluster region-like 2

Clone Names

  • FLJ36027, FLJ42953

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_037566.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP000550
    Related
    ENST00000691581.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

    Range
    21103016..21122286
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060946.1 Alternate T2T-CHM13v2.0

    Range
    21511794..21531059
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_007131.1: Suppressed sequence

    Description
    NG_007131.1: This RefSeq was permanently suppressed because it is now thought that this gene is a transcribed pseudogene.

  2. NM_207474.1: Suppressed sequence

    Description
    NM_207474.1: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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