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LINC02817 long intergenic non-protein coding RNA 2817 [ Homo sapiens (human) ]

Gene ID: 400804, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02817provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2817provided by HGNC
Primary source
HGNC:HGNC:32042
See related
Ensembl:ENSG00000234754 AllianceGenome:HGNC:32042
Gene type
ncRNA
RefSeq status
PREDICTED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C1orf140
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
1q41
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (221329928..221336296, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (220569788..220576156, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (221503270..221509638, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101929750 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2558 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1828 Neighboring gene RNA guanine-7 methyltransferase activating subunit pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1829 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:221466077-221466577 Neighboring gene uncharacterized LOC105372932 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr1:221508768-221509967 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr1:221613046-221614245 Neighboring gene uncharacterized LOC105372934 Neighboring gene uncharacterized LOC107985462 Neighboring gene solute carrier family 35 member E3 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Clone Names

  • FLJ46636, MGC176608

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_024236.1 RNA Sequence

    Status: PREDICTED

    Source sequence(s)
    AL445470
    Related
    ENST00000439004.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    221329928..221336296 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    220569788..220576156 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5VVS0.1 GenPept UniProtKB/Swiss-Prot:Q5VVS0

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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