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LOC400627 uncharacterized LOC400627 [ Homo sapiens (human) ]

Gene ID: 400627, updated on 10-Oct-2023

Summary

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Gene symbol
LOC400627
Gene description
uncharacterized LOC400627
See related
Ensembl:ENSG00000261924
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward spleen (RPKM 4.4) See more
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Genomic context

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Location:
17q25.3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (80966239..80971213, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (81873174..81878154, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (78940039..78945013, complement)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene regulatory associated protein of MTOR complex 1 Neighboring gene uncharacterized LOC124904076 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:78801060-78801750 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:78801751-78802440 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:78805646-78806418 Neighboring gene ReSE screen-validated silencer GRCh37_chr17:78807023-78807239 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:78807964-78808735 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:78829045-78829576 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr17:78829770-78830969 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:78831337-78832266 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:78847077-78848036 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12948 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:78852392-78852991 Neighboring gene uncharacterized LOC124904075 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12949 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12950 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12951 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:78933187-78933704 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:78937983-78938532 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:78939083-78939632 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:78943614-78944419 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:78944420-78945224 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9111 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:78955555-78956054 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12952 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9112 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9113 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9114 Neighboring gene ribosomal protein L12 pseudogene 37 Neighboring gene charged multivesicular body protein 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Clone Names

  • FLJ46026

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_148968.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC127496
    Related
    ENST00000576234.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    80966239..80971213 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    81873174..81878154 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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