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LINC01973 long intergenic non-protein coding RNA 1973 [ Homo sapiens (human) ]

Gene ID: 400624, updated on 10-Oct-2023

Summary

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Official Symbol
LINC01973provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1973provided by HGNC
Primary source
HGNC:HGNC:52800
See related
Ensembl:ENSG00000204283 AllianceGenome:HGNC:52800
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
17q25.3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (77879001..77884087, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (78772685..78777770, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (75875083..75880169, complement)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:75720584-75721084 Neighboring gene long intergenic non-protein coding RNA 1987 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:75765255-75765755 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:75766103-75766958 Neighboring gene MPRA-validated peak3013 silencer Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:75786503-75787313 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:75792961-75793460 Neighboring gene uncharacterized LOC105371908 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:75794738-75795238 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:75795239-75795739 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:75797657-75798610 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:75799563-75800516 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:75804770-75805270 Neighboring gene OCT4-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:75806508-75807196 Neighboring gene OCT4-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:75824461-75825107 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9036 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:75841537-75842186 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:75842187-75842834 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:75842835-75843484 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:75848286-75848891 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:75852763-75853262 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:75854805-75855306 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:75855307-75855806 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12852 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:75868565-75869066 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:75870617-75871117 Neighboring gene ReSE screen-validated silencer GRCh37_chr17:75872166-75872351 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12853 Neighboring gene uncharacterized LOC107985087 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:75886409-75886909 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:75887350-75887898 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:75903356-75903897 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:75912725-75913246 Neighboring gene RNA, U1 small nuclear 80, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Clone Names

  • FLJ45079, FLJ46474

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_028337.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC015804
    Related
    ENST00000374983.3

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    77879001..77884087 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    78772685..78777770 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001001685.1: Suppressed sequence

    Description
    NM_001001685.1: This RefSeq was permanently suppressed because it is now thought that this gene does not encode a protein.
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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