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TUBAP2 tubulin alpha pseudogene 2 [ Homo sapiens (human) ]

Gene ID: 399942, updated on 8-Nov-2023

Summary

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Official Symbol
TUBAP2provided by HGNC
Official Full Name
tubulin alpha pseudogene 2provided by HGNC
Primary source
HGNC:HGNC:14531
See related
Ensembl:ENSG00000214391 AllianceGenome:HGNC:14531
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
11q14.3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (90282563..90284173)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (90202858..90204468)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (90015731..90017341)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124902812 Neighboring gene NANOG hESC enhancer GRCh37_chr11:89961208-89961714 Neighboring gene Sharpr-MPRA regulatory region 337 Neighboring gene ReSE screen-validated silencer GRCh37_chr11:89974290-89974542 Neighboring gene cysteine and histidine rich domain containing 1 Neighboring gene DISC1 fusion partner 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:90139017-90139595 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:90138436-90139016 Neighboring gene Sharpr-MPRA regulatory region 15479 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr11:90171133-90171860 Neighboring gene NANOG hESC enhancer GRCh37_chr11:90318470-90318971 Neighboring gene microRNA 4490 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5387 Neighboring gene NANOG hESC enhancer GRCh37_chr11:90470663-90471164 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:90508083-90508821 Neighboring gene microRNA 1261

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. Choudhury NR, et al. BMC Biol, 2017 Nov 8. PMID 29117863, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Other Names

  • tubulin, alpha 1b pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_029287.2 

    Range
    101..1711
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    90282563..90284173
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_019805497.1 Reference GRCh38.p14 PATCHES

    Range
    219497..221107
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    90202858..90204468
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    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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