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HNRNPKP3 heterogeneous nuclear ribonucleoprotein K pseudogene 3 [ Homo sapiens (human) ]

Gene ID: 399881, updated on 16-Jan-2024

Summary

Official Symbol
HNRNPKP3provided by HGNC
Official Full Name
heterogeneous nuclear ribonucleoprotein K pseudogene 3provided by HGNC
Primary source
HGNC:HGNC:42376
See related
Ensembl:ENSG00000293312 AllianceGenome:HGNC:42376
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

Location:
11p12
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (43261504..43269369, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (43416727..43424619, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (43283054..43290919, complement)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene mannosidase alpha class 1B member 1 pseudogene Neighboring gene uncharacterized LOC124902662 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:43121800-43122300 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4639 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:43233497-43234097 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:43234098-43234697 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:43290423-43290924 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:43290925-43291424 Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:43333299-43334074 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:43372671-43373334 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4640 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3267 Neighboring gene apoptosis inhibitor 5 Neighboring gene tetratricopeptide repeat domain 17 Neighboring gene RN7SK pseudogene 287

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_033868.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC090588
    Related
    ENST00000511537.3

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    43261504..43269369 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    43416727..43424619 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)