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LINC01168 long intergenic non-protein coding RNA 1168 [ Homo sapiens (human) ]

Gene ID: 399829, updated on 10-Oct-2023

Summary

Official Symbol
LINC01168provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1168provided by HGNC
Primary source
HGNC:HGNC:49537
See related
Ensembl:ENSG00000240707 AllianceGenome:HGNC:49537
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC01168 in Genome Data Viewer
Location:
10q26.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (132965534..132976497)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (133914888..133925851)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (134779038..134790001)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105378572 Neighboring gene long intergenic non-protein coding RNA 1166 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:134775339-134776234 Neighboring gene long intergenic non-protein coding RNA 1167 Neighboring gene uncharacterized LOC124902527 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:134784639-134785360 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:134788466-134789292 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:134791193-134792098 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:134797107-134797622 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:134797623-134798136 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:134798137-134798651 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:134804871-134805372 Neighboring gene uncharacterized LOC107984283 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:134807738-134808420 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:134821415-134822242 Neighboring gene uncharacterized LOC112268067 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr10:134826346-134827545

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_046231.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL691429
    Related
    ENST00000461291.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    132965534..132976497
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    133914888..133925851
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)