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RPS10P1 ribosomal protein S10 pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 394255, updated on 10-Oct-2023

Summary

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Official Symbol
RPS10P1provided by HGNC
Official Full Name
ribosomal protein S10 pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:13981
See related
Ensembl:ENSG00000217275 AllianceGenome:HGNC:13981
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RPS10p; dJ34B20.13; RPS10_7_669
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Genomic context

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Location:
6p22.2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (26202123..26202705)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (26070588..26071169)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (26202351..26202933)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr6:26199013-26200212 Neighboring gene H3 clustered histone 4 Neighboring gene H2A clustered histone 7 Neighboring gene H2B clustered histone 7 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24207 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24208 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24209 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24210 Neighboring gene H4 clustered histone 5 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24211 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24212 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancers GRCh37_chr6:26216641-26217292 and GRCh37_chr6:26217293-26217944 Neighboring gene H2B clustered histone 8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. Balasubramanian S, et al. Genome Biol, 2009. PMID 19123937, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_029345.2 

    Range
    101..683
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    26202123..26202705
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    26070588..26071169
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_009560.1: Suppressed sequence

    Description
    NG_009560.1: This RefSeq was permanently suppressed because this pseudogene is now annotated on NG_001335.
Nucleotide Protein
Heading Accession and Version

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