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PDCL3P1 PDCL3 pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 392225, updated on 10-Oct-2023

Summary

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Official Symbol
PDCL3P1provided by HGNC
Official Full Name
PDCL3 pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:31826
See related
AllianceGenome:HGNC:31826
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
8q12.1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (60387201..60388192)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (60810958..60811949)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (61299760..61300751)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene carbonic anhydrase 8 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:61193435-61193941 Neighboring gene ReSE screen-validated silencer GRCh37_chr8:61193934-61194142 Neighboring gene CRISPRi-validated cis-regulatory element chr8.1767 Neighboring gene uncharacterized LOC105375864 Neighboring gene CRISPRi-validated cis-regulatory element chr8.1768 Neighboring gene CRISPRi-validated cis-regulatory element chr8.1769 Neighboring gene ReSE screen-validated silencer GRCh37_chr8:61286725-61286971 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27421 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27422 Neighboring gene long intergenic non-protein coding RNA 1301 Neighboring gene Sharpr-MPRA regulatory region 15457 Neighboring gene uncharacterized LOC124901949 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:61428694-61429554

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

Other Names

  • phosducin-like 3 pseudogene 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_022420.2 

    Range
    101..1092
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    60387201..60388192
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    60810958..60811949
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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