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SKINT1L Skint1 like (pseudogene) [ Homo sapiens (human) ]

Gene ID: 391037, updated on 10-Oct-2023

Summary

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Official Symbol
SKINT1Lprovided by HGNC
Official Full Name
Skint1 like (pseudogene)provided by HGNC
Primary source
HGNC:HGNC:33993
See related
MIM:616392; AllianceGenome:HGNC:33993
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
BTN12; SKINT1; SKINTL; SKINTP
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
1p33
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (48101715..48182428, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (47980564..48061271, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (48567387..48648100, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:48240987-48241521 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:48251591-48252091 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:48259887-48260120 Neighboring gene TraB domain containing 2B Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_8222 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:48347328-48347854 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:48347855-48348380 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:48360287-48361284 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:48362752-48363252 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:48363755-48364280 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_8235 Neighboring gene Sharpr-MPRA regulatory region 2886 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_8236 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:48399564-48400079 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_8247 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1009 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:48471086-48471636 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:48490345-48491176 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:48498970-48499470 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:48526713-48527257 Neighboring gene long intergenic non-protein coding RNA 2794 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr1:48558178-48559377 Neighboring gene cytochrome P450 family 46 subfamily A member 4, pseudogene Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr1:48674527-48675206 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:48679855-48680592 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:48697245-48697746 Neighboring gene solute carrier family 5 member 9 Neighboring gene spermatogenesis associated 6 Neighboring gene protein phosphatase 1 regulatory subunit 8 pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. The SKINT1-like gene is inactivated in hominoids but not in all primate species: implications for the origin of dendritic epidermal T cells. Mohamed RH, et al. PLoS One, 2015. PMID 25830554, Free PMC Article
  2. Skint1, the prototype of a newly identified immunoglobulin superfamily gene cluster, positively selects epidermal gammadelta T cells. Boyden LM, et al. Nat Genet, 2008 May. PMID 18408721, Free PMC Article
  3. The DNA sequence and biological annotation of human chromosome 1. Gregory SG, et al. Nature, 2006 May 18. PMID 16710414

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Other Names

  • Skint-like, pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_026749.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL109659, AL356289, BX118767, DN994130

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    48101715..48182428 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    47980564..48061271 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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