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IFITM3P7 IFITM3 pseudogene 7 [ Homo sapiens (human) ]

Gene ID: 391020, updated on 10-Oct-2023

Summary

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Official Symbol
IFITM3P7provided by HGNC
Official Full Name
IFITM3 pseudogene 7provided by HGNC
Primary source
HGNC:HGNC:54546
See related
AllianceGenome:HGNC:54546
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
1p36.11
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (25124893..25125457, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (24961179..24961743, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (25451384..25451948, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene enhancer 2 sub-fragment of super enhancer upstream of RUNX3 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:25351623-25352296 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:25353935-25354474 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:25354475-25355012 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:25355013-25355552 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 437 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 450 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 438 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 439 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 440 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 441 Neighboring gene microRNA 4425 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:25372889-25373429 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:25373430-25373969 Neighboring gene long intergenic non-protein coding RNA 2793 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:25378080-25378598 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:25381310-25381813 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:25398512-25399127 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr1:25417097-25418296 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 443 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 451 Neighboring gene MPRA-validated peak123 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 444 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 445 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 446 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 447 Neighboring gene uncharacterized LOC124903880 Neighboring gene MPRA-validated peak125 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 448 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 449 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 450 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 451 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:25494962-25495462 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:25510715-25511215 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:25525541-25526040 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:25528106-25528280 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr1:25554020-25555219 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 452 Neighboring gene SYF2 pre-mRNA splicing factor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • interferon induced transmembrane protein 3 pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_006227.1 

    Range
    101..665
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    25124893..25125457 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    24961179..24961743 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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