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OACYLP O-acyltransferase like, pseudogene [ Homo sapiens (human) ]

Gene ID: 390858, updated on 10-Oct-2023

Summary

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Official Symbol
OACYLPprovided by HGNC
Official Full Name
O-acyltransferase like, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:44362
See related
AllianceGenome:HGNC:44362
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
ACYL3P
Summary
This gene is ancient and exists in archaea, bacteria, fungi, worms, flies, and mammals. The gene has been inactivated by mutation and is nonfunctional in humans and chimpanzees. [provided by RefSeq, Oct 2008]
Expression
Biased expression in prostate (RPKM 1.3) and endometrium (RPKM 0.1) See more
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Genomic context

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Location:
18q21.32
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 18 NC_000018.10 (58996611..59069309)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 18 NC_060942.1 (59197897..59270582)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 18 NC_000018.9 (56663843..56736541)

Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene U8 small nucleolar RNA Neighboring gene long intergenic non-protein coding RNA 1926 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:56513039-56513851 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:56513852-56514664 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:56514665-56515477 Neighboring gene Sharpr-MPRA regulatory region 466 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr18:56529025-56529566 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:56529567-56530106 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:56537205-56538186 Neighboring gene H3K27ac hESC enhancer GRCh37_chr18:56556548-56557048 Neighboring gene H3K27ac hESC enhancer GRCh37_chr18:56557049-56557549 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr18:56559638-56560464 Neighboring gene zinc finger protein 532 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:56582766-56583276 Neighboring gene RNA, U2 small nuclear 69, pseudogene Neighboring gene H3K27ac hESC enhancer GRCh37_chr18:56635193-56636106 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr18:56650842-56652041 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9489 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:56716067-56717037 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:56717038-56718007 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr18:56729547-56730746 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13406 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13407 Neighboring gene NANOG hESC enhancer GRCh37_chr18:56758336-56758837 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9490 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13408 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13409 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9491 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13410 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13411 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13412 Neighboring gene signal recognition particle 19kDa pseudogene Neighboring gene SEC11 homolog C, signal peptidase complex subunit

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Comparative genomics search for losses of long-established genes on the human lineage. Zhu J, et al. PLoS Comput Biol, 2007 Dec. PMID 18085818, Free PMC Article
  2. Identification and analysis of unitary pseudogenes: historic and contemporary gene losses in humans and other primates. Zhang ZD, et al. Genome Biol, 2010. PMID 20210993, Free PMC Article
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Other Names

  • ACYL3 pseudogene
  • acyltransferase 3, pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_024021.3 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC040963

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000018.10 Reference GRCh38.p14 Primary Assembly

    Range
    58996611..59069309
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060942.1 Alternate T2T-CHM13v2.0

    Range
    59197897..59270582
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Chemical Information
Molecular Biology Databases