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PRPF38AP1 PRP38 domain containing A pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 389935, updated on 10-Oct-2023

Summary

Official Symbol
PRPF38AP1provided by HGNC
Official Full Name
PRP38 domain containing A pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:44692
See related
AllianceGenome:HGNC:44692
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

See PRPF38AP1 in Genome Data Viewer
Location:
10p14
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (8161075..8162394)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (8162033..8163340)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (8203038..8204357)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:8091667-8092510 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:8092511-8093354 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:8093355-8094198 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2115 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2116 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2117 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2118 Neighboring gene GATA3 antisense RNA 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2984 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:8105038-8105952 Neighboring gene GATA binding protein 3 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:8115451-8116429 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:8127093-8127295 Neighboring gene NANOG hESC enhancer GRCh37_chr10:8128242-8128743 Neighboring gene uncharacterized LOC105376395 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2985 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:8154631-8155132 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2986 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2987 Neighboring gene uncharacterized LOC107984206 Neighboring gene uncharacterized LOC107984205 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:8233580-8234508 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:8234509-8235437 Neighboring gene long intergenic non-protein coding RNA 708

Genomic regions, transcripts, and products

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_022160.2 

    Range
    2..1321
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    8161075..8162394
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    8162033..8163340
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)