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LOC389906 zinc finger protein 839 pseudogene [ Homo sapiens (human) ]

Gene ID: 389906, updated on 10-Oct-2023

Summary

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Gene symbol
LOC389906
Gene description
zinc finger protein 839 pseudogene
See related
Ensembl:ENSG00000285756
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in skin (RPKM 4.9), endometrium (RPKM 3.8) and 25 other tissues See more
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Genomic context

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Location:
Xp22.33
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (3817535..3843894, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (3436910..3463288, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (3735576..3761935, complement)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene protein kinase cAMP-dependent X-linked catalytic subunit Neighboring gene PRKX antisense RNA 1 Neighboring gene Sharpr-MPRA regulatory region 13686 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29374 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chrX:3620023-3620624 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:3629037-3629558 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29375 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29376 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20640 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20641 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20642 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:3632955-3633602 Neighboring gene RPS27A pseudogene 20 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chrX:3650386-3651585 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20643 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20644 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20645 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29377 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20646 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20647 Neighboring gene uncharacterized LOC124900487 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:3747599-3748438 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20648 Neighboring gene H3K27ac hESC enhancer GRCh37_chrX:3761495-3761995 Neighboring gene tRNA-Ile (anticodon GAT) 1-1 Neighboring gene zinc finger protein 839 pseudogene Neighboring gene tRNA-Ile (anticodon GAT) 1-2 Neighboring gene zinc finger protein 839 pseudogene Neighboring gene tRNA-Ile (anticodon GAT) 1-3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome-wide CRISPR screen identifies HNRNPL as a prostate cancer dependency regulating RNA splicing. Fei T, et al. Proc Natl Acad Sci U S A, 2017 Jun 27. PMID 28611215, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Other Names

  • zinc finger protein 839-like

Clone Names

  • FLJ20463, FLJ40484

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_034031.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BX842570, BX890604
    Related
    ENST00000662024.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    3817535..3843894 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    3436910..3463288 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001045547.1: Suppressed sequence

    Description
    NM_001045547.1: This RefSeq was permanently suppressed because it was based on partial sequence data from a different gene.
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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