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RPL27AP6 ribosomal protein L27a pseudogene 6 [ Homo sapiens (human) ]

Gene ID: 389435, updated on 10-Oct-2023

Summary

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Official Symbol
RPL27AP6provided by HGNC
Official Full Name
ribosomal protein L27a pseudogene 6provided by HGNC
Primary source
HGNC:HGNC:35977
See related
Ensembl:ENSG00000218426 AllianceGenome:HGNC:35977
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RPL27A_4_770
Summary
Although this locus has an open reading frame that could produce a protein of the same or nearly the same size as that of the RPL27A gene, there is no convincing evidence of transcription. It is thus being annotated as a pseudogene.[provided by RefSeq, Feb 2009]
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Genomic context

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Location:
6q25.2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (153282249..153282754, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (154484344..154484849, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (153603384..153603889, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene ReSE screen-validated silencer GRCh37_chr6:153336909-153337091 Neighboring gene regulator of G protein signaling 17 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:153432509-153433188 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17695 Neighboring gene RNA, 5S ribosomal pseudogene 224 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17696 Neighboring gene uncharacterized LOC105378066 Neighboring gene uncharacterized LOC107986661 Neighboring gene RNA, 5S ribosomal pseudogene 225

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Proteomic analysis of HIV-1 Gag interacting partners using proximity-dependent biotinylation. Le Sage V, et al. Virol J, 2015 Sep 11. PMID 26362536, Free PMC Article
  2. The sequence of the human genome. Venter JC, et al. Science, 2001 Feb 16. PMID 11181995
  3. LGALS3BP regulates centriole biogenesis and centrosome hypertrophy in cancer cells. Fogeron ML, et al. Nat Commun, 2013. PMID 23443559
  4. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. Balasubramanian S, et al. Genome Biol, 2009. PMID 19123937, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_010315.1 

    Range
    101..606
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    153282249..153282754 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    154484344..154484849 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001089587.2: Suppressed sequence

    Description
    NM_001089587.2: This RefSeq was suppressed permanently because there is no convincing evidence this locus is transcribed.
Nucleotide Protein
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Gene LinkOut

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Chemical Information
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