U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LINC00207 long intergenic non-protein coding RNA 207 [ Homo sapiens (human) ]

Gene ID: 388910, updated on 10-Oct-2023

Summary

Go to the top of the page Help
Official Symbol
LINC00207provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 207provided by HGNC
Primary source
HGNC:HGNC:37255
See related
Ensembl:ENSG00000187012 AllianceGenome:HGNC:37255
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
NCRNA00207
Expression
Low expression observed in reference dataset See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
22q13.31
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (44569340..44572449)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 22 NC_060946.1 (45053126..45056235)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 22 NC_000022.10 (44965220..44968329)

Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105373059 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:44939408-44939962 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:44939963-44940517 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:44941073-44941626 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:44946331-44946858 Neighboring gene keratin 18 pseudogene 23 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:44970093-44970632 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:44988307-44988808 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:44990461-44991156 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:44991157-44991851 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:44992547-44993241 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:45003083-45003788 Neighboring gene long intergenic non-protein coding RNA 229 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:45013983-45014484 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:45015586-45016350 Neighboring gene uncharacterized LOC105373060 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:45020177-45020676 Neighboring gene acidic nuclear phosphoprotein 32 family member B pseudogene 2

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. The genetic architecture of economic and political preferences. Benjamin DJ, et al. Proc Natl Acad Sci U S A, 2012 May 22. PMID 22566634, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
The genetic architecture of economic and political preferences.
EBI GWAS Catalog

Variation

Go to the top of the page Help

See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

Go to the top of the page Help

Markers

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_028409.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AL022333, BC144508, BU585030
    Related
    ENST00000605505.1

  2. NR_028410.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an alternate internal exon and uses and alternate splice site, compared to variant 1.
    Source sequence(s)
    AL022333, BC144506, BU585030
    Related
    ENST00000603530.5

  3. NR_028411.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks an alternate internal exon, compared to variant 1.
    Source sequence(s)
    AL022333, BU585030
    Related
    ENST00000657777.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

    Range
    44569340..44572449
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060946.1 Alternate T2T-CHM13v2.0

    Range
    45053126..45056235
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001012986.1: Suppressed sequence

    Description
    NM_001012986.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Chemical Information
Molecular Biology Databases
Research Materials
Miscellaneous