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LINC00316 long intergenic non-protein coding RNA 316 [ Homo sapiens (human) ]

Gene ID: 388830, updated on 10-Oct-2023

Summary

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Official Symbol
LINC00316provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 316provided by HGNC
Primary source
HGNC:HGNC:19723
See related
Ensembl:ENSG00000237664 AllianceGenome:HGNC:19723
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
PRED59; C21orf111; NCRNA00316
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
21q22.3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 21 NC_000021.9 (45338590..45341990, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 21 NC_060945.1 (43702938..43706963, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 21 NC_000021.8 (46758505..46761905, complement)

Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13401 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:46708421-46709151 Neighboring gene long intergenic non-protein coding RNA 205 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:46711580-46712088 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:46712089-46712596 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:46714121-46714627 Neighboring gene uncharacterized LOC124905040 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:46726129-46726934 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:46726935-46727740 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:46738439-46739282 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:46739283-46740124 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:46743143-46744140 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:46747045-46747766 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:46749933-46750654 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:46766854-46767770 Neighboring gene uncharacterized LOC105372839 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:46773249-46774123 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:46777975-46778628 Neighboring gene CRISPRi-validated cis-regulatory element chr21.1536 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:46782348-46783073 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr21:46783494-46784693 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr21:46785000-46786199 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:46786885-46787636 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:46787637-46788388 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:46790350-46790860 Neighboring gene uncharacterized LOC124905041

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Creation of genome-wide protein expression libraries using random activation of gene expression. Harrington JJ, et al. Nat Biotechnol, 2001 May. PMID 11329013

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_103811.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BG221754, BX322557
    Related
    ENST00000416722.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000021.9 Reference GRCh38.p14 Primary Assembly

    Range
    45338590..45341990 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060945.1 Alternate T2T-CHM13v2.0

    Range
    43702938..43706963 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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