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SNHG17 small nucleolar RNA host gene 17 [ Homo sapiens (human) ]

Gene ID: 388796, updated on 25-Dec-2023

Summary

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Official Symbol
SNHG17provided by HGNC
Official Full Name
small nucleolar RNA host gene 17provided by HGNC
Primary source
HGNC:HGNC:48600
See related
Ensembl:ENSG00000196756 AllianceGenome:HGNC:48600
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in bone marrow (RPKM 12.9), ovary (RPKM 5.2) and 25 other tissues See more
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Genomic context

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Location:
20q11.23
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (38420588..38435328, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (40148174..40162915, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (37049235..37064020, complement)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:36982312-36982872 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:36982873-36983432 Neighboring gene H3K27ac hESC enhancer GRCh37_chr20:36986777-36987278 Neighboring gene lipopolysaccharide binding protein Neighboring gene ReSE screen-validated silencer GRCh37_chr20:36991245-36991414 Neighboring gene ReSE screen-validated silencer GRCh37_chr20:37017902-37018103 Neighboring gene uncharacterized LOC124904901 Neighboring gene small nucleolar RNA SNORA71 Neighboring gene Sharpr-MPRA regulatory region 13566 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:37059106-37059606 Neighboring gene uncharacterized LOC124904958 Neighboring gene small nucleolar RNA, H/ACA box 71B Neighboring gene small nucleolar RNA, H/ACA box 71A Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17856 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17857 Neighboring gene small nucleolar RNA, H/ACA box 71C Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17858 Neighboring gene small nucleolar RNA, H/ACA box 71D Neighboring gene small nucleolar RNA SNORA71 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17859 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:37076132-37076686 Neighboring gene small nucleolar RNA, H/ACA box 71E Neighboring gene small nucleolar RNA host gene 11

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Integrative Analysis and Experimental Validation Indicated That SNHG17 Is a Prognostic Marker in Prostate Cancer and a Modulator of the Tumor Microenvironment via a Competitive Endogenous RNA Regulatory Network. Li J, et al. Oxid Med Cell Longev, 2022. PMID 35864871, Free PMC Article
  2. LncRNA SNHG17 Contributes to Proliferation, Migration, and Poor Prognosis of Hepatocellular Carcinoma. Luo Y, et al. Can J Gastroenterol Hepatol, 2021. PMID 34557456, Free PMC Article
  3. LncRNA SNHG17 predicts poor prognosis and promotes cell proliferation and migration in hepatocellular carcinoma. Zhu XM, et al. Eur Rev Med Pharmacol Sci, 2021 Jun. PMID 34227089
  4. LncRNA SNHG17 acts as a ceRNA of miR-324-3p to contribute the progression of osteosarcoma. Zhang YT, et al. J Biol Regul Homeost Agents, 2020 Jul-Aug. PMID 32933241
  5. LncRNA SNHG17 promotes the progression of oral squamous cell carcinoma by modulating miR-375/PAX6 axis. Tong F, et al. Cancer Biomark, 2021. PMID 32924983

See all (29) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. SNHG17 alters anaerobic glycolysis by resetting phosphorylation modification of PGK1 to foster pro-tumor macrophage formation in pancreatic ductal adenocarcinoma.
    Title: SNHG17 alters anaerobic glycolysis by resetting phosphorylation modification of PGK1 to foster pro-tumor macrophage formation in pancreatic ductal adenocarcinoma.
  2. Identification of two novel lipid metabolism-related long non-coding RNAs (SNHG17 and LINC00837) as potential signatures for osteosarcoma prognosis and precise treatment.
    Title: Identification of two novel lipid metabolism-related long non-coding RNAs (SNHG17 and LINC00837) as potential signatures for osteosarcoma prognosis and precise treatment.
  3. Lactobacillus rhamnosus GG ameliorates radiation-induced lung fibrosis via lncRNASNHG17/PTBP1/NICD axis modulation.
    Title: Lactobacillus rhamnosus GG ameliorates radiation-induced lung fibrosis via lncRNASNHG17/PTBP1/NICD axis modulation.
  4. Low SP1 SUMOylation-dependent SNHG17 upregulation promotes drug resistance of gastric cancer through impairing hsa-miR-23b-3p-induced Notch2 inhibition.
    Title: Low SP1 SUMOylation-dependent SNHG17 upregulation promotes drug resistance of gastric cancer through impairing hsa-miR-23b-3p-induced Notch2 inhibition.
  5. Silencing of lncRNA SNHG17 inhibits the tumorigenesis of epithelial ovarian cancer through regulation of miR-485-5p/AKT1 axis.
    Title: Silencing of lncRNA SNHG17 inhibits the tumorigenesis of epithelial ovarian cancer through regulation of miR-485-5p/AKT1 axis.
  6. Integrative Analysis and Experimental Validation Indicated That SNHG17 Is a Prognostic Marker in Prostate Cancer and a Modulator of the Tumor Microenvironment via a Competitive Endogenous RNA Regulatory Network.
    Title: Integrative Analysis and Experimental Validation Indicated That SNHG17 Is a Prognostic Marker in Prostate Cancer and a Modulator of the Tumor Microenvironment via a Competitive Endogenous RNA Regulatory Network.
  7. LncRNA SNHG17 predicts poor prognosis and promotes cell proliferation and migration in hepatocellular carcinoma.
    Title: LncRNA SNHG17 predicts poor prognosis and promotes cell proliferation and migration in hepatocellular carcinoma.
  8. LncRNA SNHG17 interacts with LRPPRC to stabilize c-Myc protein and promote G1/S transition and cell proliferation.
    Title: LncRNA SNHG17 interacts with LRPPRC to stabilize c-Myc protein and promote G1/S transition and cell proliferation.
  9. LncRNA SNHG17 regulates cell proliferation and invasion by targeting miR-338-3p/SOX4 axis in esophageal squamous cell carcinoma.
    Title: LncRNA SNHG17 regulates cell proliferation and invasion by targeting miR-338-3p/SOX4 axis in esophageal squamous cell carcinoma.
  10. SNHG17, as an EMT-related lncRNA, promotes the expression of c-Myc by binding to c-Jun in esophageal squamous cell carcinoma.
    Title: SNHG17, as an EMT-related lncRNA, promotes the expression of c-Myc by binding to c-Jun in esophageal squamous cell carcinoma.
Submit: New GeneRIF Correction See all GeneRIFs (24)

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Other Names

  • small nucleolar RNA host gene 17 (non-protein coding)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_015366.6 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000690361.1

  2. NR_027241.4 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000660885.2

  3. NR_152753.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095

  4. NR_152754.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000665735.2

  5. NR_152755.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000665233.3

  6. NR_152756.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000663540.3

  7. NR_152757.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000689414.2

  8. NR_152758.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000666268.2

  9. NR_152759.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095

  10. NR_152760.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095

  11. NR_152761.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000456953.8

  12. NR_152762.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000654183.2

  13. NR_152763.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095

  14. NR_152764.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000417578.8

  15. NR_185920.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000658488.3

  16. NR_185921.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095

  17. NR_185922.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000662213.1

  18. NR_185923.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095

  19. NR_185924.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000657216.2

  20. NR_185925.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000651115.2

  21. NR_185926.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000653697.1

  22. NR_185927.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095

  23. NR_185928.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000701507.1

  24. NR_185929.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000687532.2

  25. NR_185930.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095

  26. NR_185931.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000655520.2

  27. NR_185932.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000666419.1

  28. NR_185934.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000701521.1

  29. NR_185935.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000701793.1

  30. NR_185936.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000671249.1

  31. NR_185937.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000664073.2

  32. NR_185938.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000701736.1

  33. NR_185939.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000689917.2

  34. NR_185940.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000666331.1

  35. NR_185941.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000658905.1

  36. NR_185942.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095

  37. NR_185943.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000665181.1

  38. NR_185944.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000692262.1

  39. NR_185945.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095

  40. NR_185946.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000661252.1

  41. NR_185947.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000660558.2

  42. NR_185948.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000669480.1

  43. NR_185949.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095

  44. NR_185950.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095

  45. NR_185951.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000668054.2

  46. NR_185952.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095

  47. NR_185953.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095

  48. NR_185954.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095

  49. NR_185955.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000687490.1

  50. NR_185956.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095

  51. NR_185957.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000436764.8

  52. NR_185958.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000664636.1

  53. NR_185959.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000669137.1

  54. NR_185960.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000657843.1

  55. NR_185961.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095

  56. NR_185962.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095

  57. NR_185963.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000670051.1

  58. NR_185964.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000669033.2

  59. NR_185965.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000656320.1

  60. NR_185966.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095

  61. NR_185967.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000690441.1

  62. NR_185968.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095

  63. NR_185969.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095

  64. NR_185970.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095

  65. NR_185972.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095

  66. NR_185973.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095

  67. NR_185974.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391095
    Related
    ENST00000413755.6

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

    Range
    38420588..38435328 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060944.1 Alternate T2T-CHM13v2.0

    Range
    40148174..40162915 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials