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LINC02591 long intergenic non-protein coding RNA 2591 [ Homo sapiens (human) ]

Gene ID: 388692, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02591provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2591provided by HGNC
Primary source
HGNC:HGNC:53901
See related
AllianceGenome:HGNC:53901
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in thyroid (RPKM 3.7), spleen (RPKM 3.2) and 23 other tissues See more
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Genomic context

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Location:
1q21.1
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (143792495..143797108)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (142864600..142869213)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (149287130..149291743)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 91 member A3, pseudogene Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:149285989-149286613 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:149286614-149287237 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:149287238-149287862 Neighboring gene RNA, U1 small nuclear 143, pseudogene Neighboring gene tRNA-Phe (anticodon GAA) 9-1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:149290176-149290676 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:149290677-149291177 Neighboring gene tRNA-Val (CAC) 8-1 Neighboring gene tRNA-Val (anticodon CAC) 4-1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. p53-inducible long non-coding RNA PICART1 mediates cancer cell proliferation and migration. Cao Y, et al. Int J Oncol, 2017 May. PMID 28339031
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Clone Names

  • FLJ13580, FLJ42559

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables triplet codon-amino acid adaptor activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in translation IEA
Inferred from Electronic Annotation
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_111933.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC239800

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    143792495..143797108
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    142864600..142869213
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001013644.2: Suppressed sequence

    Description
    NM_001013644.2: This RefSeq was removed because it is not thought that this locus is protein-coding

  2. NR_027002.1: Suppressed sequence

    Description
    NR_027002.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript.
Nucleotide Protein
Heading Accession and Version

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