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C17orf100 chromosome 17 open reading frame 100 [ Homo sapiens (human) ]

Gene ID: 388327, updated on 5-Mar-2024

Summary

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Official Symbol
C17orf100provided by HGNC
Official Full Name
chromosome 17 open reading frame 100provided by HGNC
Primary source
HGNC:HGNC:34494
See related
Ensembl:ENSG00000256806 AllianceGenome:HGNC:34494
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Orthologs
mouse all
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Genomic context

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See C17orf100 in Genome Data Viewer
Location:
17p13.1
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (6651762..6653476)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (6552391..6554105)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (6555082..6556795)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene KIAA0753 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:6540081-6540863 Neighboring gene uncharacterized LOC122526780 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:6540864-6541645 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11584 Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:6543558-6544439 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11585 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11586 Neighboring gene thioredoxin domain containing 17 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11587 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11588 Neighboring gene mediator complex subunit 31 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11589 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8077 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8078 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:6558426-6558998 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:6560276-6560912 Neighboring gene microRNA 4520-1 Neighboring gene microRNA 4520-2 Neighboring gene arachidonate 15-lipoxygenase pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The sequence of the human genome. Venter JC, et al. Science, 2001 Feb 16. PMID 11181995
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Homology

General protein information

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Preferred Names
uncharacterized protein C17orf100
Names
hCG1985469

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001105520.2 → NP_001098990.1  uncharacterized protein C17orf100

    See identical proteins and their annotated locations for NP_001098990.1

    Status: VALIDATED

    Source sequence(s)
    AC004706, BC052606, BX488537
    Consensus CDS
    CCDS73952.1
    UniProtKB/Swiss-Prot
    A8MU93, D3DTM5
    Related
    ENSP00000491070.1, ENST00000542475.3

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    6651762..6653476
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    6552391..6554105
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A8MU93.2 GenPept UniProtKB/Swiss-Prot:A8MU93

Gene LinkOut

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