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OGFOD1P1 2-oxoglutarate and iron dependent oxygenase domain containing 1 pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 387924, updated on 10-Oct-2023

Summary

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Official Symbol
OGFOD1P1provided by HGNC
Official Full Name
2-oxoglutarate and iron dependent oxygenase domain containing 1 pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:39202
See related
AllianceGenome:HGNC:39202
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
13q14.2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (49210090..49212158, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (48431396..48433464, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (49784226..49786294, complement)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene fibronectin type III domain containing 3A Neighboring gene H3K27ac hESC enhancer GRCh37_chr13:49686954-49687458 Neighboring gene H3K27ac hESC enhancer GRCh37_chr13:49687459-49687962 Neighboring gene RNY3 pseudogene 2 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:49739489-49740046 Neighboring gene COX7C pseudogene 1 Neighboring gene ReSE screen-validated silencer GRCh37_chr13:49793904-49794160 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5340 Neighboring gene THAP domain containing 12 pseudogene 10 Neighboring gene motilin receptor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

Clone Names

  • KIAA0970

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_011397.3 

    Range
    101..2169
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

    Range
    49210090..49212158 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060937.1 Alternate T2T-CHM13v2.0

    Range
    48431396..48433464 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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