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SLC7A5P2 solute carrier family 7 member 5 pseudogene 2 [ Homo sapiens (human) ]

Gene ID: 387254, updated on 11-Apr-2024

Summary

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Official Symbol
SLC7A5P2provided by HGNC
Official Full Name
solute carrier family 7 member 5 pseudogene 2provided by HGNC
Primary source
HGNC:HGNC:24951
See related
AllianceGenome:HGNC:24951
Gene type
pseudo
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
IMAA; MMAA
Summary
Predicted to enable L-amino acid transmembrane transporter activity. Predicted to be involved in L-alpha-amino acid transmembrane transport and L-amino acid transport. Predicted to be integral component of membrane. [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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Location:
16p12.2
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (21517893..21520444, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (21452651..21455202, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (21529214..21531765, complement)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA U13 Neighboring gene SMG1 pseudogene 3 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:21503231-21503732 Neighboring gene H3K27ac hESC enhancer GRCh37_chr16:21512787-21513303 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:21513304-21513819 Neighboring gene uncharacterized LOC124903662 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:21513820-21514336 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_43023 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:21520603-21521153 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:21522758-21523594 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:21523595-21524430 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10556 Neighboring gene microRNA 3680-1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:21526656-21527164 Neighboring gene ReSE screen-validated silencer GRCh37_chr16:21529065-21529231 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:21531393-21532126 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:21532127-21532859 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:21532860-21533594 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:21535062-21535794 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:21536490-21537300 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:21537301-21538111 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:21538112-21538922 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_43111 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:21549325-21549826 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:21549827-21550326 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:21552333-21553071 Neighboring gene carbonic anhydrase 5A pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10557 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:21561118-21561618 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:21562361-21562862 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:21565604-21566414 Neighboring gene uncharacterized LOC101927814 Neighboring gene methyltransferase 9, His-X-His N1(pi)-histidine

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Up-regulated expression of a novel gene in activated human peripheral blood mononuclear cells that is a truncated paralog of the human system L-amino acid transporter 1. Ito M, et al. Int J Biochem Cell Biol, 2002 Sep. PMID 12009310
  2. High-throughput analyses of hnRNP H1 dissects its multi-functional aspect. Uren PJ, et al. RNA Biol, 2016. PMID 26760575, Free PMC Article
  3. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. Choudhury NR, et al. BMC Biol, 2017 Nov 8. PMID 29117863, Free PMC Article
  4. VIRMA mediates preferential m(6)A mRNA methylation in 3'UTR and near stop codon and associates with alternative polyadenylation. Yue Y, et al. Cell Discov, 2018. PMID 29507755, Free PMC Article
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Other Names

  • LAT1-3TM protein 2
  • SLC7A5 pseudogene
  • hLAT1-3TM
  • solute carrier family 7 (amino acid transporter light chain, L system), member 5 pseudogene 2
  • solute carrier family 7 (cationic amino acid transporter, y+ system), member 5 pseudogene 2

Gene Ontology Provided by GOA

Process Evidence Code Pubs
involved_in L-alpha-amino acid transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_002594.1 RNA Sequence

    Status: PROVISIONAL

    Source sequence(s)
    AC005632

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    21517893..21520444 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_017852933.1 Reference GRCh38.p14 PATCHES

    Range
    1584373..1586924
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    21452651..21455202 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001031629.1: Suppressed sequence

    Description
    NM_001031629.1: This RefSeq record was removed by NCBI staff. Contact info@ncbi.nlm.nih.gov for further information.

  2. NM_199182.2: Suppressed sequence

    Description
    NM_199182.2: This RefSeq record was removed by NCBI staff. Contact info@ncbi.nlm.nih.gov for further information.
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9GIP4.2 GenPept UniProtKB/Swiss-Prot:Q9GIP4

Gene LinkOut

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Chemical Information
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