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BC061237 cDNA sequence BC061237 [ Mus musculus (house mouse) ]

Gene ID: 385138, updated on 8-Feb-2024

Summary

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Official Symbol
BC061237provided by MGI
Official Full Name
cDNA sequence BC061237provided by MGI
Primary source
MGI:MGI:2682320
See related
Ensembl:ENSMUSG00000072145 AllianceGenome:MGI:2682320
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Is expressed in several structures, including bladder; limb mesenchyme; liver; nervous system; and skeletal musculature. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward testis adult (RPKM 6.9) See more
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Genomic context

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Location:
14 C1; 14 22.55 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (44737579..44743802)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (44500122..44506345)

Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene predicted gene 5930 Neighboring gene STARR-seq mESC enhancer starr_36519 Neighboring gene predicted gene 8229 Neighboring gene predicted gene 3371 Neighboring gene STARR-seq mESC enhancer starr_36520 Neighboring gene STARR-seq mESC enhancer starr_36521 Neighboring gene predicted gene 8232 Neighboring gene STARR-seq mESC enhancer starr_36522 Neighboring gene STARR-seq mESC enhancer starr_36523 Neighboring gene predicted gene 5624 Neighboring gene predicted gene 8247 Neighboring gene BCL2/adenovirus E1B interacting protein 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Clone Names

  • MGC74390

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC385138

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_198677.1 → NP_941079.1  uncharacterized protein LOC385138

    See identical proteins and their annotated locations for NP_941079.1

    Status: PREDICTED

    Source sequence(s)
    BC061237
    Consensus CDS
    CCDS49462.1
    UniProtKB/TrEMBL
    E9Q2T2, E9Q7X3, Q6P8I2
    Related
    ENSMUSP00000094662.3, ENSMUST00000096899.3
    Conserved Domains (1) summary
    pfam04822
    Location:12 → 87
    Takusan; Takusan

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000080.7 Reference GRCm39 C57BL/6J

    Range
    44737579..44743802
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030247875.1 → XP_030103735.1  uncharacterized protein LOC385138 isoform X1

    Conserved Domains (1) summary
    pfam04822
    Location:1 → 24
    Takusan
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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