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Gm5177 predicted pseudogene 5177 [ Mus musculus (house mouse) ]

Gene ID: 382450, updated on 8-Feb-2024

Summary

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Official Symbol
Gm5177provided by MGI
Official Full Name
predicted pseudogene 5177provided by MGI
Gene description
glyceraldehyde-3-phosphate dehydrogenase pseudogene
Primary source
MGI:MGI:3646657
See related
Ensembl:ENSMUSG00000121799 AllianceGenome:MGI:3646657
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
EG382450
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
10 A1; 10 3.44 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (10481689..10492057)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (10605945..10616313)

Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_25742 Neighboring gene eukaryotic translation initiation factor 4A1 pseudogene Neighboring gene androglobin Neighboring gene STARR-seq mESC enhancer starr_25744 Neighboring gene STARR-seq mESC enhancer starr_25746 Neighboring gene RAB32, member RAS oncogene family Neighboring gene STARR-seq mESC enhancer starr_25748 Neighboring gene predicted gene, 23601 Neighboring gene glutamate receptor, metabotropic 1 Neighboring gene predicted gene, 53612

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
  5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Other Names

  • glyceraldehyde-3-phosphate dehydrogenase pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_033630.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC100149
    Related
    ENSMUST00000183337.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000076.7 Reference GRCm39 C57BL/6J

    Range
    10481689..10492057
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_007843.1: Suppressed sequence

    Description
    NG_007843.1: This RefSeq was permanently suppressed because there is sufficient evidence that this locus is transcribed.
Nucleotide Protein Strain
Heading Accession and Version

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