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Gm1110 predicted gene 1110 [ Mus musculus (house mouse) ]

Gene ID: 382064, updated on 11-Apr-2024

Summary

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Official Symbol
Gm1110provided by MGI
Official Full Name
predicted gene 1110provided by MGI
Primary source
MGI:MGI:2685956
See related
Ensembl:ENSMUSG00000079644 AllianceGenome:MGI:2685956
Gene type
protein coding
RefSeq status
INFERRED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Predicted to enable beta-galactosidase activity. Predicted to be active in vacuole. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward genital fat pad adult (RPKM 110.1) See more
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Genomic context

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Location:
9 A4; 9 11.8 cM
Exon count:
24
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (26790863..26834480, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (26879567..26923184, complement)

Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene galactosidase, beta 1-like 2 Neighboring gene galactosidase, beta 1 like 3 Neighboring gene STARR-seq mESC enhancer starr_23614 Neighboring gene STARR-seq mESC enhancer starr_23615 Neighboring gene STARR-seq mESC enhancer starr_23616 Neighboring gene zinc finger CCCH type containing 11A pseudogene Neighboring gene STARR-positive B cell enhancer ABC_E8282 Neighboring gene acyl-Coenzyme A dehydrogenase family, member 8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Systematic identification and integrative analysis of novel genes expressed specifically or predominantly in mouse epididymis. Oh J, et al. BMC Genomics, 2006 Dec 13. PMID 17166261, Free PMC Article
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables beta-galactosidase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in vacuole IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
beta-galactosidase-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001281475.1 → NP_001268404.1  beta-galactosidase-like protein precursor

    See identical proteins and their annotated locations for NP_001268404.1

    Status: INFERRED

    Source sequence(s)
    AC138616
    Consensus CDS
    CCDS90521.1
    UniProtKB/TrEMBL
    F6Y113, Q0Q237
    Related
    ENSMUSP00000110916.3, ENSMUST00000115261.3
    Conserved Domains (1) summary
    cl38930
    Location:55 → 366
    AmyAc_family; Alpha amylase catalytic domain family

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000075.7 Reference GRCm39 C57BL/6J

    Range
    26790863..26834480 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006510461.3 → XP_006510524.1  beta-galactosidase-like protein isoform X2

    UniProtKB/TrEMBL
    Q0Q237
    Conserved Domains (1) summary
    cl38930
    Location:55 → 343
    AmyAc_family; Alpha amylase catalytic domain family

  2. XM_006510459.3 → XP_006510522.1  beta-galactosidase-like protein isoform X1

    See identical proteins and their annotated locations for XP_006510522.1

    UniProtKB/TrEMBL
    F6Y113, Q0Q237
    Conserved Domains (1) summary
    cl38930
    Location:55 → 366
    AmyAc_family; Alpha amylase catalytic domain family

  3. XM_006510460.3 → XP_006510523.1  beta-galactosidase-like protein isoform X1

    See identical proteins and their annotated locations for XP_006510523.1

    UniProtKB/TrEMBL
    F6Y113, Q0Q237
    Conserved Domains (1) summary
    cl38930
    Location:55 → 366
    AmyAc_family; Alpha amylase catalytic domain family

  4. XM_006510463.2 → XP_006510526.1  beta-galactosidase-like protein isoform X3

    UniProtKB/TrEMBL
    Q0Q237
    Conserved Domains (2) summary
    COG1874
    Location:1 → 493
    GanA; Beta-galactosidase GanA [Carbohydrate transport and metabolism]
    cl38930
    Location:1 → 242
    AmyAc_family; Alpha amylase catalytic domain family

RNA

  1. XR_001778935.2 RNA Sequence

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001177509.1: Suppressed sequence

    Description
    NM_001177509.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
Nucleotide Protein Strain
Heading Accession and Version

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