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Speer4c2 spermatogenesis associated glutamate (E)-rich protein 4C2 [ Mus musculus (house mouse) ]

Gene ID: 381715, updated on 8-Feb-2024

Summary

Official Symbol
Speer4c2provided by MGI
Official Full Name
spermatogenesis associated glutamate (E)-rich protein 4C2provided by MGI
Primary source
MGI:MGI:2441686
See related
Ensembl:ENSMUSG00000069720 AllianceGenome:MGI:2441686
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
4930572O03Rik
Expression
Restricted expression toward testis adult (RPKM 6.5) See more
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Genomic context

Location:
5 A2; 5 6.51 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (15857286..15862057, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (15652288..15657059, complement)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 30613 Neighboring gene predicted gene, 21083 Neighboring gene predicted gene, 30417 Neighboring gene spermatogenesis associated glutamate (E)-rich protein 4D Neighboring gene STARR-seq mESC enhancer starr_12481 Neighboring gene spermatogenesis associated glutamate (E)-rich protein 4C, opposite strand transcript Neighboring gene STARR-positive B cell enhancer mm9_chr5:15203829-15204130 Neighboring gene spermatogenesis associated glutamate (E)-rich protein 4C1 Neighboring gene STARR-seq mESC enhancer starr_12483 Neighboring gene predicted gene, 52852

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Other Names

  • spermatogenesis associated glutamate (E)-rich protein pseudogene

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_073011.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC117685, AK076955
    Related
    ENSMUST00000092696.5

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    15857286..15862057 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)