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Armh1 armadillo-like helical domain containing 1 [ Mus musculus (house mouse) ]

Gene ID: 381544, updated on 5-Mar-2024

Summary

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Official Symbol
Armh1provided by MGI
Official Full Name
armadillo-like helical domain containing 1provided by MGI
Primary source
MGI:MGI:2686507
See related
Ensembl:ENSMUSG00000060268 AllianceGenome:MGI:2686507
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm1661; Gm1662; Ncrna00082; 1700012C08Rik
Summary
Orthologous to human ARMH1 (armadillo like helical domain containing 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in testis adult (RPKM 51.7) and adrenal adult (RPKM 1.8) See more
Orthologs
human all
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Genomic context

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Location:
4 D1; 4 53.43 cM
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (117070523..117109329, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (117213326..117251917, complement)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E1651 Neighboring gene predicted gene, 23143 Neighboring gene predicted gene, 23287 Neighboring gene CapStarr-seq enhancer MGSCv37_chr4:116923419-116923602 Neighboring gene STARR-positive B cell enhancer ABC_E7982 Neighboring gene transmembrane protein 53 Neighboring gene STARR-seq mESC enhancer starr_11163 Neighboring gene ring finger protein 220 Neighboring gene predicted gene 12843 Neighboring gene predicted gene, 40231

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Armadillo-like helical domain containing-4 is dynamically expressed in both the first and second heart fields. Conway SJ, et al. Gene Expr Patterns, 2019 Dec. PMID 31655130, Free PMC Article
  2. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  3. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
armadillo-like helical domain containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001145637.1 → NP_001139109.1  armadillo-like helical domain containing protein 1

    See identical proteins and their annotated locations for NP_001139109.1

    Status: VALIDATED

    Source sequence(s)
    AK132996, AL671866, BC171980
    Consensus CDS
    CCDS51280.1
    UniProtKB/TrEMBL
    E9Q963
    Related
    ENSMUSP00000128613.2, ENSMUST00000165128.9
    Conserved Domains (1) summary
    pfam17741
    Location:1 → 268
    DUF5578; Family of unknown function (DUF5578)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    117070523..117109329 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006503206.4 → XP_006503269.1  armadillo-like helical domain containing protein 1 isoform X1

    See identical proteins and their annotated locations for XP_006503269.1

    UniProtKB/TrEMBL
    E9Q963
    Conserved Domains (1) summary
    pfam17741
    Location:1 → 268
    DUF5578; Family of unknown function (DUF5578)

  2. XM_006503207.5 → XP_006503270.1  armadillo-like helical domain containing protein 1 isoform X1

    See identical proteins and their annotated locations for XP_006503270.1

    UniProtKB/TrEMBL
    E9Q963
    Conserved Domains (1) summary
    pfam17741
    Location:1 → 268
    DUF5578; Family of unknown function (DUF5578)

  3. XM_030253635.2 → XP_030109495.1  armadillo-like helical domain containing protein 1 isoform X2

    Conserved Domains (1) summary
    pfam17741
    Location:1 → 198
    DUF5578; Family of unknown function (DUF5578)

RNA

  1. XR_867885.4 RNA Sequence

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001033774.2: Suppressed sequence

    Description
    NM_001033774.2: This RefSeq was removed because currently there is insufficient support for the transcript and protein.
Nucleotide Protein Strain
Heading Accession and Version

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