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Gm1647 predicted gene 1647 [ Mus musculus (house mouse) ]

Gene ID: 381452, updated on 8-Feb-2024

Summary

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Official Symbol
Gm1647provided by MGI
Official Full Name
predicted gene 1647provided by MGI
Primary source
MGI:MGI:2686493
See related
Ensembl:ENSMUSG00000094763 AllianceGenome:MGI:2686493
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Restricted expression toward testis adult (RPKM 2.4) See more
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Genomic context

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Location:
3 E1; 3 32.19 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (69038566..69064510)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (69131233..69157177)

Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 9630025H16 gene Neighboring gene karyopherin subunit alpha 4 Neighboring gene predicted gene, 22009 Neighboring gene STARR-positive B cell enhancer ABC_E651 Neighboring gene STARR-seq mESC enhancer starr_07919 Neighboring gene STARR-positive B cell enhancer mm9_chr3:69012576-69012876 Neighboring gene predicted gene, 54203 Neighboring gene ADP-ribosylation factor-like 14

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_126533.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BC062821
    Related
    ENSMUST00000195406.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000069.7 Reference GRCm39 C57BL/6J

    Range
    69038566..69064510
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001243000.1: Suppressed sequence

    Description
    NM_001243000.1: This RefSeq was permanently suppressed because the coding sequence is primarily repetitive sequence, and there is insufficient support for the protein.
Nucleotide Protein Strain
Heading Accession and Version

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