U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Spata6l spermatogenesis associated 6 like [ Mus musculus (house mouse) ]

Gene ID: 381218, updated on 5-Mar-2024

Summary

Go to the top of the page Help
Official Symbol
Spata6lprovided by MGI
Official Full Name
spermatogenesis associated 6 likeprovided by MGI
Primary source
MGI:MGI:1918036
See related
Ensembl:ENSMUSG00000064202 AllianceGenome:MGI:1918036
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
4430402I18Rik
Summary
Predicted to enable myosin light chain binding activity. Predicted to be involved in spermatogenesis. Predicted to be located in sperm connecting piece. Orthologous to human SPATA6L (spermatogenesis associated 6 like). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in testis adult (RPKM 26.8), duodenum adult (RPKM 4.7) and 6 other tissues See more
Orthologs
human all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
19 C1; 19 23.57 cM
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (28899836..28945289, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (28917638..28967832, complement)

Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 52404 Neighboring gene solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1 Neighboring gene eukaryotic translation elongation factor 1 alpha 1 pseudogene Neighboring gene phospholipid phosphatase 6 Neighboring gene phytanoyl-CoA hydroxylase pseudogene Neighboring gene tektin 5 like

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, et al. Development, 2000 Apr. PMID 10725249
  2. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  3. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
  4. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
enables myosin light chain binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
involved_in spermatogenesis IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  
located_in sperm connecting piece IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
spermatogenesis associated 6-like protein

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001374140.1 → NP_001361069.1  spermatogenesis associated 6-like protein isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC113961
    UniProtKB/TrEMBL
    B7ZWC9, F6TAK0, F6UU42
    Conserved Domains (1) summary
    pfam14909
    Location:7 → 145
    SPATA6; Spermatogenesis-assoc protein 6

  2. NM_001374152.1 → NP_001361081.1  spermatogenesis associated 6-like protein isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC113961
    UniProtKB/Swiss-Prot
    B2RV46
    UniProtKB/TrEMBL
    B7ZWC9, F6TAK0
    Conserved Domains (2) summary
    pfam14909
    Location:1 → 91
    SPATA6; Spermatogenesis-assoc protein 6
    pfam15741
    Location:127 → 334
    LRIF1; Ligand-dependent nuclear receptor-interacting factor 1

  3. NM_001374153.1 → NP_001361082.1  spermatogenesis associated 6-like protein isoform 3

    Status: VALIDATED

    Source sequence(s)
    AC113961
    UniProtKB/TrEMBL
    B7ZWC9, F6TAK0
    Conserved Domains (2) summary
    pfam14909
    Location:7 → 131
    SPATA6; Spermatogenesis-assoc protein 6
    pfam15741
    Location:167 → 374
    LRIF1; Ligand-dependent nuclear receptor-interacting factor 1

  4. NM_001374154.1 → NP_001361083.1  spermatogenesis associated 6-like protein isoform 4

    Status: VALIDATED

    Source sequence(s)
    AC113961
    UniProtKB/TrEMBL
    B7ZWC9, B7ZWD0, F6TAK0
    Related
    ENSMUSP00000132800.2, ENSMUST00000164777.8
    Conserved Domains (2) summary
    pfam14909
    Location:1 → 77
    SPATA6; Spermatogenesis-assoc protein 6
    pfam15741
    Location:113 → 320
    LRIF1; Ligand-dependent nuclear receptor-interacting factor 1

  5. NM_198651.2 → NP_941053.2  spermatogenesis associated 6-like protein isoform 2

    See identical proteins and their annotated locations for NP_941053.2

    Status: VALIDATED

    Source sequence(s)
    AK014471, AK031997
    Consensus CDS
    CCDS37948.1
    UniProtKB/Swiss-Prot
    B2RV46
    UniProtKB/TrEMBL
    B7ZWC9, F6TAK0
    Related
    ENSMUSP00000025872.7, ENSMUST00000025872.13
    Conserved Domains (2) summary
    pfam14909
    Location:1 → 91
    SPATA6; Spermatogenesis-assoc protein 6
    pfam15741
    Location:127 → 334
    LRIF1; Ligand-dependent nuclear receptor-interacting factor 1

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000085.7 Reference GRCm39 C57BL/6J

    Range
    28899836..28945289 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036161620.1 → XP_036017513.1  spermatogenesis associated 6-like protein isoform X4

    Conserved Domains (1) summary
    pfam14909
    Location:89 → 143
    SPATA6; Spermatogenesis-assoc protein 6

  2. XM_036161619.1 → XP_036017512.1  spermatogenesis associated 6-like protein isoform X3

    UniProtKB/TrEMBL
    B7ZWC9, F6TAK0, F6UU42
    Related
    ENSMUSP00000123818.2, ENSMUST00000162110.8
    Conserved Domains (1) summary
    pfam14909
    Location:7 → 145
    SPATA6; Spermatogenesis-assoc protein 6

  3. XM_011247274.4 → XP_011245576.3  spermatogenesis associated 6-like protein isoform X2

    Conserved Domains (2) summary
    pfam14909
    Location:206 → 323
    SPATA6; Spermatogenesis-assoc protein 6
    pfam15741
    Location:359 → 566
    LRIF1; Ligand-dependent nuclear receptor-interacting factor 1

  4. XM_011247272.4 → XP_011245574.3  spermatogenesis associated 6-like protein isoform X1

    Conserved Domains (2) summary
    pfam14909
    Location:206 → 337
    SPATA6; Spermatogenesis-assoc protein 6
    pfam15741
    Location:373 → 580
    LRIF1; Ligand-dependent nuclear receptor-interacting factor 1

  5. XM_030250980.2 → XP_030106840.1  spermatogenesis associated 6-like protein isoform X5

    UniProtKB/TrEMBL
    B7ZWC9, B7ZWD0, F6TAK0
    Conserved Domains (2) summary
    pfam14909
    Location:1 → 77
    SPATA6; Spermatogenesis-assoc protein 6
    pfam15741
    Location:113 → 320
    LRIF1; Ligand-dependent nuclear receptor-interacting factor 1

RNA

  1. XR_001782595.3 RNA Sequence

  2. XR_001782596.3 RNA Sequence

  3. XR_003952793.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
B2RV46.1 GenPept UniProtKB/Swiss-Prot:B2RV46

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools
Miscellaneous