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Tmem171 transmembrane protein 171 [ Mus musculus (house mouse) ]

Gene ID: 380863, updated on 5-Mar-2024

Summary

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Official Symbol
Tmem171provided by MGI
Official Full Name
transmembrane protein 171provided by MGI
Primary source
MGI:MGI:2685751
See related
Ensembl:ENSMUSG00000052485 AllianceGenome:MGI:2685751
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm905
Summary
Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM171 (transmembrane protein 171). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in colon adult (RPKM 50.4), stomach adult (RPKM 17.5) and 5 other tissues See more
Orthologs
human all
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Genomic context

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See Tmem171 in Genome Data Viewer
Location:
13 D1; 13 52.13 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (98822744..98832142, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (98686236..98695654, complement)

Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene calponin 3, acidic pseudogene Neighboring gene transmembrane protein 174 Neighboring gene predicted gene 9465 Neighboring gene FCH domain only 2 Neighboring gene predicted gene, 34995

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  2. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 

General gene information

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Homology

Clone Names

  • MGC117733

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
transmembrane protein 171

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001025606.1 → NP_001020777.1  transmembrane protein 171 isoform 2

    See identical proteins and their annotated locations for NP_001020777.1

    Status: VALIDATED

    Source sequence(s)
    BC099490
    Consensus CDS
    CCDS26716.1
    UniProtKB/Swiss-Prot
    Q4KL18
    Related
    ENSMUSP00000070369.8, ENSMUST00000064347.8
    Conserved Domains (1) summary
    pfam15471
    Location:4 → 317
    TMEM171; Transmembrane protein family 171

  2. NM_001373965.1 → NP_001360894.1  transmembrane protein 171 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC131187
    Conserved Domains (1) summary
    pfam15471
    Location:4 → 318
    TMEM171; Transmembrane protein family 171

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000079.7 Reference GRCm39 C57BL/6J

    Range
    98822744..98832142 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011244677.4 → XP_011242979.1  transmembrane protein 171 isoform X1

    See identical proteins and their annotated locations for XP_011242979.1

    Conserved Domains (1) summary
    pfam15471
    Location:4 → 318
    TMEM171; Transmembrane protein family 171

  2. XM_011244676.1 → XP_011242978.1  transmembrane protein 171 isoform X1

    See identical proteins and their annotated locations for XP_011242978.1

    Conserved Domains (1) summary
    pfam15471
    Location:4 → 318
    TMEM171; Transmembrane protein family 171

  3. XM_011244678.1 → XP_011242980.1  transmembrane protein 171 isoform X2

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q4KL18.1 GenPept UniProtKB/Swiss-Prot:Q4KL18

Gene LinkOut

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