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Lsmem1 leucine-rich single-pass membrane protein 1 [ Mus musculus (house mouse) ]

Gene ID: 380755, updated on 5-Mar-2024

Summary

Official Symbol
Lsmem1provided by MGI
Official Full Name
leucine-rich single-pass membrane protein 1provided by MGI
Primary source
MGI:MGI:2685735
See related
Ensembl:ENSMUSG00000071342 AllianceGenome:MGI:2685735
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm889
Summary
Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human LSMEM1 (leucine rich single-pass membrane protein 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in heart adult (RPKM 9.3), mammary gland adult (RPKM 0.9) and 3 other tissues See more
Orthologs
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Genomic context

Location:
12 B1; 12 18.06 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (40226385..40249314, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (40176386..40199315, complement)

Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E7130 Neighboring gene ADP-ribosylation factor-like 4A, opposite strand Neighboring gene scinderin Neighboring gene CapStarr-seq enhancer MGSCv37_chr12:40926695-40926804 Neighboring gene interferon-related developmental regulator 1 Neighboring gene CapStarr-seq enhancer MGSCv37_chr12:40949998-40950107 Neighboring gene microRNA 1938 Neighboring gene predicted gene 7008

Genomic regions, transcripts, and products

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
leucine-rich single-pass membrane protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001033437.2NP_001028609.1  leucine-rich single-pass membrane protein 1

    See identical proteins and their annotated locations for NP_001028609.1

    Status: PROVISIONAL

    Source sequence(s)
    AK142184
    Consensus CDS
    CCDS25892.1
    UniProtKB/Swiss-Prot
    Q3UQS2, Q3UZ75
    UniProtKB/TrEMBL
    B2RVW5
    Related
    ENSMUSP00000093434.3, ENSMUST00000095760.3
    Conserved Domains (1) summary
    pfam15145
    Location:1128
    DUF4577; Domain of unknown function (DUF4577)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000078.7 Reference GRCm39 C57BL/6J

    Range
    40226385..40249314 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)