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WASH2P WASP family homolog 2, pseudogene [ Homo sapiens (human) ]

Gene ID: 375260, updated on 10-Oct-2023

Summary

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Official Symbol
WASH2Pprovided by HGNC
Official Full Name
WASP family homolog 2, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:33145
See related
Ensembl:ENSG00000291134 AllianceGenome:HGNC:33145
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
FAM39B
Summary
Predicted to enable alpha-tubulin binding activity. Predicted to be involved in Arp2/3 complex-mediated actin nucleation and retrograde transport, endosome to Golgi. Predicted to be located in early endosome and recycling endosome. Predicted to be part of WASH complex. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in testis (RPKM 26.7), spleen (RPKM 25.8) and 25 other tissues See more
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Genomic context

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See WASH2P in Genome Data Viewer
Location:
2q14.1
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (113583653..113599037)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (114008336..114023723)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (114341230..114356614)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:114334474-114334974 Neighboring gene uncharacterized LOC124907875 Neighboring gene family with sequence similarity 138 member B Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:114340974-114341805 Neighboring gene microRNA 1302-3 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:114349651-114350508 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:114354507-114355491 Neighboring gene uncharacterized LOC124907874 Neighboring gene DEAD/H-box helicase 11 like 2 (pseudogene) Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11884 Neighboring gene ribosomal protein L23a pseudogene 7 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11885

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Characterization of the murine orthologue of a novel human subtelomeric multigene family. Gianfrancesco F, et al. Cytogenet Cell Genet, 2001. PMID 11701968
  2. Human subtelomeric WASH genes encode a new subclass of the WASP family. Linardopoulou EV, et al. PLoS Genet, 2007 Dec. PMID 18159949, Free PMC Article
  3. Differentially regulated and evolved genes in the fully sequenced Xq/Yq pseudoautosomal region. Ciccodicola A, et al. Hum Mol Genet, 2000 Feb 12. PMID 10655549
  4. Diverse fates of paralogs following segmental duplication of telomeric genes. Wong A, et al. Genomics, 2004 Aug. PMID 15233989
  5. Protein array based interactome analysis of amyloid-β indicates an inhibition of protein translation. Virok DP, et al. J Proteome Res, 2011 Apr 1. PMID 21244100

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Other Names

  • WAS protein family homolog 2, pseudogene
  • family with sequence similarity 39, member B

Clone Names

  • FLJ77647, FLJ98615, MGC52000, MGC90409, MGC104889, MGC111476, MGC117230, DKFZp434K1323

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_024077.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL078621, BC073149, BX377099, BX537637, DA685507
    Related
    ENST00000692602.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    113583653..113599037
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    114008336..114023723
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_198943.1: Suppressed sequence

    Description
    NM_198943.1: This RefSeq was temporarily suppressed because currently there is insufficient data to support this transcript and its predicted protein.
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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