U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

TPTE2P6 TPTE2 pseudogene 6 [ Homo sapiens (human) ]

Gene ID: 374491, updated on 10-Oct-2023

Summary

Go to the top of the page Help
Official Symbol
TPTE2P6provided by HGNC
Official Full Name
TPTE2 pseudogene 6provided by HGNC
Primary source
HGNC:HGNC:42644
See related
AllianceGenome:HGNC:42644
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in testis (RPKM 2.3), endometrium (RPKM 0.5) and 5 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
13q12.12
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (24580208..24597676)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (23788272..23805738)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (25154346..25171814)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105370295 Neighboring gene Sharpr-MPRA regulatory region 11501 Neighboring gene ankyrin repeat domain-containing protein 26-like Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7478 Neighboring gene paraspeckle component 1 pseudogene 2 Neighboring gene uncharacterized LOC107984610 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:25188083-25188583 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:25201760-25202598 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:25205109-25205688 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5179 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:25256097-25256677 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:25256777-25257278 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:25257279-25257778 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5180 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr13:25267931-25269130 Neighboring gene ATPase H+/K+ transporting non-gastric alpha2 subunit Neighboring gene RNY1 pseudogene 7

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

Variation

Go to the top of the page Help

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

Go to the top of the page Help

Other Names

  • TPTE and PTEN homologous inositol lipid phosphatase pseudogene
  • transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene 6

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_002815.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL137411, AL359538, BC045761, DN831683

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

    Range
    24580208..24597676
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060937.1 Alternate T2T-CHM13v2.0

    Range
    23788272..23805738
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.