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Fam180a family with sequence similarity 180, member A [ Rattus norvegicus (Norway rat) ]

Gene ID: 362336, updated on 5-Mar-2024

Summary

Official Symbol
Fam180aprovided by RGD
Official Full Name
family with sequence similarity 180, member Aprovided by RGD
Primary source
RGD:1308013
See related
Ensembl:ENSRNOG00000011750 AllianceGenome:RGD:1308013
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1308013
Summary
Orthologous to human FAM180A (family with sequence similarity 180 member A). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Kidney (RPKM 47.0), Uterus (RPKM 34.7) and 9 other tissues See more
Orthologs
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Genomic context

See Fam180a in Genome Data Viewer
Location:
4q22
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (64959999..64975176, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (63992867..64008047, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (62845054..62860361, complement)

Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene short transmembrane mitochondrial protein 1 Neighboring gene solute carrier family 13 member 4 Neighboring gene uncharacterized LOC134486753 Neighboring gene uncharacterized LOC134486754 Neighboring gene SPT4 homolog, DSIF elongation factor subunit, pseudogene 2

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001108621.1NP_001102091.1  protein FAM180A precursor

    See identical proteins and their annotated locations for NP_001102091.1

    Status: PROVISIONAL

    Source sequence(s)
    CH473959
    UniProtKB/TrEMBL
    A0A8I5ZZP3, A6IEP1, D3Z9K6
    Related
    ENSRNOP00000015752.4, ENSRNOT00000015752.6
    Conserved Domains (1) summary
    pfam15173
    Location:27162
    FAM180; FAM180 family

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086022.1 Reference GRCr8

    Range
    64959999..64975176 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)