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Speer4d spermatogenesis associated glutamate (E)-rich protein 4D [ Mus musculus (house mouse) ]

Gene ID: 360220, updated on 8-Feb-2024

Summary

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Official Symbol
Speer4dprovided by MGI
Official Full Name
spermatogenesis associated glutamate (E)-rich protein 4Dprovided by MGI
Primary source
MGI:MGI:2668869
See related
Ensembl:ENSMUSG00000070933 AllianceGenome:MGI:2668869
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
SPEER-4D; 4933431D05Rik
Summary
Located in nucleus. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in testis adult (RPKM 6.9) and mammary gland adult (RPKM 0.4) See more
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Genomic context

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Location:
5 A2; 5 6.5 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (15824097..15828862)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (15619099..15623864)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 21847 Neighboring gene predicted gene, 21190 Neighboring gene predicted gene, 30613 Neighboring gene predicted gene, 21083 Neighboring gene predicted gene, 30417 Neighboring gene spermatogenesis associated glutamate (E)-rich protein 4C2 Neighboring gene STARR-seq mESC enhancer starr_12481 Neighboring gene spermatogenesis associated glutamate (E)-rich protein 4C, opposite strand transcript Neighboring gene STARR-positive B cell enhancer mm9_chr5:15203829-15204130 Neighboring gene spermatogenesis associated glutamate (E)-rich protein 4C1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Analysis of regulatory elements of E-cadherin with reporter gene constructs in transgenic mouse embryos. Stemmler MP, et al. Dev Dyn, 2003 Jun. PMID 12761851
  2. SPEER--a new family of testis-specific genes from the mouse. Spiess AN, et al. Biol Reprod, 2003 Jun. PMID 12606357
  3. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, et al. Development, 2000 Apr. PMID 10725249
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
spermatogenesis associated glutamate (E)-rich protein 4d
Names
sperm-associated glutamate (E)-rich protein 4d
spermatogenic-associated glutamate (E)-rich protein 4d

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_025759.3 → NP_080035.2  spermatogenesis associated glutamate (E)-rich protein 4d

    See identical proteins and their annotated locations for NP_080035.2

    Status: VALIDATED

    Source sequence(s)
    AC117685, AK017002
    Consensus CDS
    CCDS19095.1
    UniProtKB/TrEMBL
    L7N216, Q9D3W2
    Related
    ENSMUSP00000092615.3, ENSMUST00000095006.9
    Conserved Domains (2) summary
    pfam04822
    Location:8 → 89
    Takusan; Takusan
    cl14876
    Location:122 → 190
    Zinc_peptidase_like; Zinc peptidases M18, M20, M28, and M42

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    15824097..15828862
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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