U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

IGKV1OR-2 immunoglobulin kappa variable 1/OR-2 (pseudogene) [ Homo sapiens (human) ]

Gene ID: 3532, updated on 10-Oct-2023

Summary

Go to the top of the page Help
Official Symbol
IGKV1OR-2provided by HGNC
Official Full Name
immunoglobulin kappa variable 1/OR-2 (pseudogene)provided by HGNC
Primary source
HGNC:HGNC:5761
See related
Ensembl:ENSG00000156755 IMGT/GENE-DB:IGKV1/OR-2; AllianceGenome:HGNC:5761
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
IGKVPZ2; IGKV1OR2; IGKV1/OR-2
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
9q13
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (64765056..64765539, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (80023486..80023969, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (69777474..69777957, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124902169 Neighboring gene uncharacterized LOC107987068 Neighboring gene ankyrin repeat domain 30B pseudogene Neighboring gene BCL2 interacting protein 3 pseudogene 4 Neighboring gene ZFP37 zinc finger protein pseudogene

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. The Z family, a group of transposed human immunoglobulin V kappa genes. Straubinger B, et al. Gene, 1988 Sep 30. PMID 2853098
  2. Of orphons and UHOs. Delimitation of the germline repertoire of human immunoglobulin kappa genes. Röschenthaler F, et al. Biol Chem Hoppe Seyler, 1992 Apr. PMID 1596359

GeneRIFs: Gene References Into Functions

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

Variation

Go to the top of the page Help

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

Go to the top of the page Help

Other Names

  • immunoglobulin kappa variable region pseudogene Z2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_011657.1 

    Range
    101..584
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    64765056..64765539 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    80023486..80023969 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases