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RAET1F retinoic acid early transcript 1F (pseudogene) [ Homo sapiens (human) ]

Gene ID: 353089, updated on 10-Oct-2023

Summary

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Official Symbol
RAET1Fprovided by HGNC
Official Full Name
retinoic acid early transcript 1F (pseudogene)provided by HGNC
Primary source
HGNC:HGNC:16794
See related
AllianceGenome:HGNC:16794
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
6q25.1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (149910028..149910490)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (151109371..151109833)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (150231164..150231626)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene RAET1E-LRP11 readthrough Neighboring gene RAET1E antisense RNA 1 Neighboring gene retinoic acid early transcript 1E Neighboring gene Sharpr-MPRA regulatory region 9442 Neighboring gene multimerin 2 pseudogene Neighboring gene ReSE screen-validated silencer GRCh37_chr6:150238439-150238724 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:150246453-150246988 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:150246989-150247523 Neighboring gene retinoic acid early transcript 1G Neighboring gene uncharacterized LOC105378052

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A cluster of ten novel MHC class I related genes on human chromosome 6q24.2-q25.3. Radosavljevic M, et al. Genomics, 2002 Jan. PMID 11827464

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_005420.3 

    Range
    101..563
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    149910028..149910490
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    151109371..151109833
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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