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IGKV2OR22-3 immunoglobulin kappa variable 2/OR22-3 (pseudogene) [ Homo sapiens (human) ]

Gene ID: 3529, updated on 10-Oct-2023

Summary

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Official Symbol
IGKV2OR22-3provided by HGNC
Official Full Name
immunoglobulin kappa variable 2/OR22-3 (pseudogene)provided by HGNC
Primary source
HGNC:HGNC:5812
See related
IMGT/GENE-DB:IGKV2/OR22-3; AllianceGenome:HGNC:5812
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
IGKVP4; IGKV2OR223
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Genomic context

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Location:
22q11.1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (16921324..16921937, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 22 NC_060946.1 (17597987..17598600, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 22 NC_000022.10 (17402214..17402827, complement)

Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene MT-ND1 pseudogene 17 Neighboring gene immunoglobulin kappa variable 2/OR22-4 (pseudogene) Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13426 Neighboring gene immunoglobulin kappa variable 3/OR22-2 (pseudogene) Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr22:17413842-17415041 Neighboring gene immunoglobulin kappa variable 1/OR22-1 (pseudogene)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Dispersed human immunoglobulin kappa light-chain genes. Lötscher E, et al. Nature, 1986 Apr 3-9. PMID 3083265

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • IGKV2/OR22-3
  • immunoglobulin kappa variable region pseudogene 4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_011670.1 

    Range
    101..714
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

    Range
    16921324..16921937 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060946.1 Alternate T2T-CHM13v2.0

    Range
    17597987..17598600 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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