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LOC349160 uncharacterized LOC349160 [ Homo sapiens (human) ]

Gene ID: 349160, updated on 10-Oct-2023

Summary

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Gene symbol
LOC349160
Gene description
uncharacterized LOC349160
See related
Ensembl:ENSG00000234352
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
7q33
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (136898773..137164341, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (138208472..138473848, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (136583520..136849088, complement)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105375524 Neighboring gene MPRA-validated peak6766 silencer Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr7:136464707-136465229 Neighboring gene small nucleolar RNA U13 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:136554078-136554840 Neighboring gene cholinergic receptor muscarinic 2 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_97737 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_97763 Neighboring gene microRNA 490 Neighboring gene keratin 8 pseudogene 51 Neighboring gene MPRA-validated peak6770 silencer Neighboring gene ReSE screen-validated silencer GRCh37_chr7:136765721-136765913 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:136778098-136778598 Neighboring gene MPRA-validated peak6771 silencer Neighboring gene MPRA-validated peak6772 silencer Neighboring gene MPRA-validated peak6775 silencer Neighboring gene MPRA-validated peak6776 silencer Neighboring gene uncharacterized LOC105375525 Neighboring gene ribosomal protein L18 pseudogene 5 Neighboring gene NANOG hESC enhancer GRCh37_chr7:136926348-136926849 Neighboring gene HERV.E-PTN promoter Neighboring gene small nucleolar RNA SNORD81 Neighboring gene pleiotrophin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Antisense promoter of human L1 retrotransposon drives transcription of adjacent cellular genes. Speek M. Mol Cell Biol, 2001 Mar. PMID 11238933, Free PMC Article
  2. Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders. den Hoed M, et al. Nat Genet, 2013 Jun. PMID 23583979, Free PMC Article
  3. Genome-wide meta-analysis identifies new susceptibility loci for migraine. Anttila V, et al. Nat Genet, 2013 Aug. PMID 23793025, Free PMC Article
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Genome-wide meta-analysis identifies new susceptibility loci for migraine.
EBI GWAS Catalog
Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders.
EBI GWAS Catalog

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Clone Names

  • AC009264.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_046103.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC009264, AK097470
    Related
    ENST00000425981.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    136898773..137164341 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    138208472..138473848 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials