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FAM86EP family with sequence similarity 86 member E, pseudogene [ Homo sapiens (human) ]

Gene ID: 348926, updated on 10-Oct-2023

Summary

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Official Symbol
FAM86EPprovided by HGNC
Official Full Name
family with sequence similarity 86 member E, pseudogeneprovided by HGNC
Gene description
family with sequence similarity 86, member A pseudogene
Primary source
HGNC:HGNC:28017
See related
Ensembl:ENSG00000290374 AllianceGenome:HGNC:28017
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in thyroid (RPKM 1.6), endometrium (RPKM 1.0) and 25 other tissues See more
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Genomic context

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See FAM86EP in Genome Data Viewer
Location:
4p16.3
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (3941760..3955428, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (3941182..3954841, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (3943487..3957155, complement)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene olfactory receptor family 7 subfamily E member 162 pseudogene Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:3910694-3911194 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:3911195-3911695 Neighboring gene uncharacterized LOC124900652 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:3927243-3928080 Neighboring gene EVA1C pseudogene 2 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:3928081-3928918 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:3928919-3929756 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:3930595-3931432 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:3934253-3935094 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:3935095-3935934 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:3939416-3940161 Neighboring gene ALG1 like 7, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:3947364-3947864 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:3949186-3949686 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15210 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15211 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15212 Neighboring gene uncharacterized LOC105374358 Neighboring gene Sharpr-MPRA regulatory region 9760 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:3966743-3967306 Neighboring gene ectonucleotide pyrophosphatase/phosphodiesterase 7 pseudogene 9

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. Brandenberger R, et al. Nat Biotechnol, 2004 Jun. PMID 15146197
  2. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Other Names

  • family with sequence similarity 86, member A pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_130740.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AC226119, BC044637, CN271531, HY065247
    Related
    ENST00000313946.12

  2. NR_130741.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice site in an internal exon, compared to variant 1.
    Source sequence(s)
    AC226119, BC044637, CN271531, HY065247

  3. NR_130742.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks an alternate internal exon and contains a different alternate internal exon, compared to variant 1.
    Source sequence(s)
    AC226119, BC044637, CN271531, HY065247

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    3941760..3955428 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    3941182..3954841 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NR_024253.1: Suppressed sequence

    Description
    NR_024253.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript.
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Chemical Information
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