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MRPL42P2 mitochondrial ribosomal protein L42 pseudogene 2 [ Homo sapiens (human) ]

Gene ID: 346116, updated on 10-Oct-2023

Summary

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Official Symbol
MRPL42P2provided by HGNC
Official Full Name
mitochondrial ribosomal protein L42 pseudogene 2provided by HGNC
Primary source
HGNC:HGNC:29711
See related
AllianceGenome:HGNC:29711
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See MRPL42P2 in Genome Data Viewer
Location:
6p22.3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (16171467..16172159)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (16044056..16044748)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (16171698..16172390)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene myosin regulatory light chain interacting protein Neighboring gene uncharacterized LOC124901514 Neighboring gene PERP pseudogene 3 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24097 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24098 Neighboring gene RNA, U6 small nuclear 1114, pseudogene Neighboring gene ReSE screen-validated silencer GRCh37_chr6:16215087-16215263 Neighboring gene CRISPRi-validated cis-regulatory element chr6.847 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:16217722-16217944 Neighboring gene CRISPRi-validated cis-regulatory element chr6.848 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16956 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16957 Neighboring gene guanosine monophosphate reductase Neighboring gene NANOG hESC enhancer GRCh37_chr6:16259269-16259823 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:16262581-16263080 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:16264120-16264690 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:16264691-16265260 Neighboring gene Sharpr-MPRA regulatory region 9524 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24099

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification and characterization of over 100 mitochondrial ribosomal protein pseudogenes in the human genome. Zhang Z, et al. Genomics, 2003 May. PMID 12706105

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_002907.3 

    Range
    59..751
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    16171467..16172159
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    16044056..16044748
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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