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CYCSP39 CYCS pseudogene 39 [ Homo sapiens (human) ]

Gene ID: 342358, updated on 10-Oct-2023

Summary

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Official Symbol
CYCSP39provided by HGNC
Official Full Name
CYCS pseudogene 39provided by HGNC
Primary source
HGNC:HGNC:24412
See related
AllianceGenome:HGNC:24412
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
HC1; HCP39
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Genomic context

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Location:
16p12.1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (25454141..25454716, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (25730639..25731214, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (25465462..25466037, complement)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene H3K27ac hESC enhancer GRCh37_chr16:25268532-25269092 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7296 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10607 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10608 Neighboring gene zinc finger with KRAB and SCAN domains 2 Neighboring gene ZKSCAN2 divergent transcript Neighboring gene NANOG hESC enhancer GRCh37_chr16:25422594-25423095 Neighboring gene long intergenic non-protein coding RNA 2191 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr16:25453167-25454366 Neighboring gene uncharacterized LOC105371147 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr16:25564716-25565915 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr16:25580065-25581264 Neighboring gene NANOG hESC enhancer GRCh37_chr16:25586609-25587370 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr16:25644366-25645565 Neighboring gene uncharacterized LOC105369297

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The human somatic cytochrome c gene: two classes of processed pseudogenes demarcate a period of rapid molecular evolution. Evans MJ, et al. Proc Natl Acad Sci U S A, 1988 Dec. PMID 2849112, Free PMC Article
  2. The human genome has 49 cytochrome c pseudogenes, including a relic of a primordial gene that still functions in mouse. Zhang Z, et al. Gene, 2003 Jul 17. PMID 12909341

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • cytochrome c, somatic pseudogene 39

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_002988.3 

    Range
    101..676
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    25454141..25454716 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    25730639..25731214 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Chemical Information
Molecular Biology Databases