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LINC02433 long intergenic non-protein coding RNA 2433 [ Homo sapiens (human) ]

Gene ID: 340017, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02433provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2433provided by HGNC
Primary source
HGNC:HGNC:27959
See related
Ensembl:ENSG00000234111 AllianceGenome:HGNC:27959
Gene type
ncRNA
RefSeq status
PREDICTED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC02433 in Genome Data Viewer
Location:
4q32.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (157572490..157576154)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (160918087..160921751)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (158493642..158497306)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene glutamate ionotropic receptor AMPA type subunit 2 Neighboring gene uncharacterized LOC107986238 Neighboring gene uncharacterized LOC105377509 Neighboring gene Sharpr-MPRA regulatory region 11014 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:158739981-158740800 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr4:158744759-158745958 Neighboring gene GATA motif-containing MPRA enhancer 19 Neighboring gene uncharacterized LOC124900801 Neighboring gene ribosomal protein L6 pseudogene 11

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_026992.1 RNA Sequence

    Status: PREDICTED

    Source sequence(s)
    BC043561
    Related
    ENST00000507108.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    157572490..157576154
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    160918087..160921751
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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