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ALG1L6P ALG1 like 6, pseudogene [ Homo sapiens (human) ]

Gene ID: 339879, updated on 10-Oct-2023

Summary

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Official Symbol
ALG1L6Pprovided by HGNC
Official Full Name
ALG1 like 6, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:44375
See related
AllianceGenome:HGNC:44375
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
3p12.3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (75415067..75424731)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (75467426..75477095)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (75464218..75473882)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124905452 Neighboring gene EVA1C pseudogene 5 Neighboring gene LSP1 pseudogene 2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:75474297-75474798 Neighboring gene family with sequence similarity 86 member D, pseudogene Neighboring gene Sharpr-MPRA regulatory region 2645 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20103 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14535 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20104 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14536 Neighboring gene long intergenic non-protein coding RNA 2018 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:75493298-75493842 Neighboring gene ectonucleotide pyrophosphatase/phosphodiesterase 7 pseudogene 2 Neighboring gene small nuclear ribonucleoprotein polypeptide C pseudogene 10

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

Other Names

  • asparagine-linked glycosylation 1 homolog pseudogene
  • asparagine-linked glycosylation 1-like 6, pseudogene

Clone Names

  • MGC157866

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_008769.2 

    Range
    101..9765
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    75415067..75424731
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_021159989.1 Reference GRCh38.p14 PATCHES

    Range
    61708..71378
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    75467426..75477095
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    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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