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ASS1P7 argininosuccinate synthetase 1 pseudogene 7 [ Homo sapiens (human) ]

Gene ID: 339845, updated on 10-Oct-2023

Summary

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Official Symbol
ASS1P7provided by HGNC
Official Full Name
argininosuccinate synthetase 1 pseudogene 7provided by HGNC
Primary source
HGNC:HGNC:770
See related
Ensembl:ENSG00000236893 AllianceGenome:HGNC:770
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
ASSP7
Annotation information
Note: The accessions that previous defined ASSP7 (AH002611.1) aligned best to the X chromosome and now are associated with ASSP4. The name ASSP7 is associated with the pseudogene on chromosome 3. [24 Mar 2009]
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Genomic context

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Location:
3q26.32
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (177296923..177298488, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (180100081..180101646, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (177014711..177016276, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene TBL1X/Y related 1 Neighboring gene Sharpr-MPRA regulatory region 13561 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20837 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:176870313-176870813 Neighboring gene RNA, U6 small nuclear 681, pseudogene Neighboring gene Sharpr-MPRA regulatory region 10853 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr3:176911488-176912078 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14902 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:176914847-176915356 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:176915357-176915864 Neighboring gene uncharacterized LOC107986053 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr3:177001817-177002549 Neighboring gene ReSE screen-validated silencer GRCh37_chr3:177006212-177006426 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr3:177011460-177012659 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20838 Neighboring gene MPRA-validated peak4933 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14906 Neighboring gene long intergenic non-protein coding RNA 501 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20839 Neighboring gene Sharpr-MPRA regulatory region 10654 Neighboring gene Sharpr-MPRA regulatory region 4767 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:177062319-177062838 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr3:177063359-177063876 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20841 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20842 Neighboring gene Sharpr-MPRA regulatory region 9868 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:177077317-177078158 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20844 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:177083633-177084134 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20845 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20846 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20847 Neighboring gene MPRA-validated peak4934 silencer Neighboring gene MED14-independent group 3 enhancer GRCh37_chr3:177174687-177175886 Neighboring gene long intergenic non-protein coding RNA 578 Neighboring gene NANOG hESC enhancer GRCh37_chr3:177205476-177205977 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:177234333-177235097 Neighboring gene RN7SK pseudogene 52 Neighboring gene uncharacterized LOC124906306

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Molecular structures of human argininosuccinate synthetase pseudogenes. Evolutionary and mechanistic implications. Freytag SO, et al. J Biol Chem, 1984 Mar 10. PMID 6321498
  2. Human chromosomal assignments for 14 argininosuccinate synthetase pseudogenes: cloned DNAs as reagents for cytogenetic analysis. Su TS, et al. Am J Hum Genet, 1984 Sep. PMID 6093508, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • argininosuccinate synthetase pseudogene 7

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_001079.1 

    Range
    101..1666
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    177296923..177298488 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    180100081..180101646 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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