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RPS12P23 ribosomal protein S12 pseudogene 23 [ Homo sapiens (human) ]

Gene ID: 338870, updated on 10-Oct-2023

Summary

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Official Symbol
RPS12P23provided by HGNC
Official Full Name
ribosomal protein S12 pseudogene 23provided by HGNC
Primary source
HGNC:HGNC:35573
See related
AllianceGenome:HGNC:35573
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RPS12_11_1301
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Genomic context

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Location:
13q12.11
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (21094295..21094795, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (20287383..20287883, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (21668434..21668934, complement)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene large tumor suppressor kinase 2 Neighboring gene RNA, U4 small nuclear 9, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:21624857-21625356 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:21626645-21627146 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:21634192-21635084 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5160 Neighboring gene uncharacterized LOC105370104 Neighboring gene H3K27ac hESC enhancer GRCh37_chr13:21649238-21649738 Neighboring gene H3K27ac hESC enhancer GRCh37_chr13:21649739-21650239 Neighboring gene ReSE screen-validated silencer GRCh37_chr13:21676185-21676352 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7429 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr13:21687639-21688526 Neighboring gene inositol 1,3,4,5,6-pentakisphosphate 2-kinase pseudogene 1 Neighboring gene NANOG hESC enhancer GRCh37_chr13:21704143-21704651 Neighboring gene small nucleolar RNA SNORD27 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7430

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. Balasubramanian S, et al. Genome Biol, 2009. PMID 19123937, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_010945.1 

    Range
    101..601
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

    Range
    21094295..21094795 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060937.1 Alternate T2T-CHM13v2.0

    Range
    20287383..20287883 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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