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LINC02370 long intergenic non-protein coding RNA 2370 [ Homo sapiens (human) ]

Gene ID: 338797, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02370provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2370provided by HGNC
Primary source
HGNC:HGNC:27885
See related
AllianceGenome:HGNC:27885
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
12q24.33
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (131347470..131367555)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (131389348..131409390)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (131832015..131852100)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene RNA, 5S ribosomal pseudogene 376 Neighboring gene uncharacterized LOC124903055 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:131795285-131796186 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:131796187-131797088 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:131797991-131798890 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5096 Neighboring gene ReSE screen-validated silencer GRCh37_chr12:131817976-131818300 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr12:131825059-131825632 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr12:131825633-131826208 Neighboring gene ReSE screen-validated silencer GRCh37_chr12:131830309-131830533 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:131831075-131831712 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:131832905-131833449 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:131865091-131865672 Neighboring gene ReSE screen-validated silencer GRCh37_chr12:131876192-131876341 Neighboring gene ReSE screen-validated silencer GRCh37_chr12:131885230-131885407 Neighboring gene vegetative cell wall protein gp1-like Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:131914223-131914746 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:131917517-131918230 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:131925817-131926316 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7361 Neighboring gene uncharacterized LOC101929974 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:131939217-131939722 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7362 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7363 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:132012597-132013096

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Genomic variation associated with mortality among adults of European and African ancestry with heart failure: the cohorts for heart and aging research in genomic epidemiology consortium. Morrison AC, et al. Circ Cardiovasc Genet, 2010 Jun. PMID 20400778, Free PMC Article
  2. Dual proteome-scale networks reveal cell-specific remodeling of the human interactome. Huttlin EL, et al. Cell, 2021 May 27. PMID 33961781, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Genomic variation associated with mortality among adults of European and African ancestry with heart failure: the cohorts for heart and aging research in genomic epidemiology consortium.
EBI GWAS Catalog

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_103736.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC092850, AC140118

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    131347470..131367555
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    131389348..131409390
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001025466.1: Suppressed sequence

    Description
    NM_001025466.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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